BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0163100 Os08g0163100|AK064406
         (470 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61000.1  | chr1:22471096-22474046 REVERSE LENGTH=441          216   2e-56

>AT1G61000.1 | chr1:22471096-22474046 REVERSE LENGTH=441
          Length = 440

 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/445 (32%), Positives = 244/445 (54%), Gaps = 14/445 (3%)

Query: 3   SNFSFPPLTPEQIAEALHTYGLAPTANLRAEDIANPQPDLLPAVISNFLATVVDPTGADD 62
           S + +P L+   I  AL     A  A++   D+  P  D +  + +  L  +      D 
Sbjct: 2   SAYEYPRLSRSDIITALKD---AQIASVTETDLKTPTSDFVSELYTRILIYL------DA 52

Query: 63  LD----GQLGFDALASLDNPEHYMEGIRVLRLHKRASAFLESIQFPGFTXXXXXXXXXXX 118
           LD    GQ+ F+AL  L+NP+H+   ++ ++L+ +    LE +  P              
Sbjct: 53  LDEEEKGQVDFEALEQLENPDHHATSMQAMKLYCKVKDMLEMLDCPLPISFKDLLRPESS 112

Query: 119 XVQV-LSALINFLYYRDDKLALLQPIIHEFPNLDERCMELKAKLAEHQKAIADHELAAQM 177
             +  +SAL+N+  Y+D K+ L++P   E   LDE+  + +AK+A+    I + + A + 
Sbjct: 113 RTEFFISALLNYGLYKDSKMDLIRPKAEELGLLDEQRKQCEAKVAQLNAEIGEFDEAVER 172

Query: 178 EEPMVQQIEAEVNSLKQKLVEYNKKQLALRANATAINDKKEETHRKIAKNDFELVKLAQE 237
           + P VQ++EA +  L +K++E N +Q++LRA    + +K  +   +I+K +F+LV+  QE
Sbjct: 173 DLPFVQELEANIEQLNKKILELNNQQMSLRATFQKMREKSTQMDNEISKAEFDLVETVQE 232

Query: 238 NSKLLPKIVESPEKLQRALEEKKTARAELKNAEKIATQSVQEKTATLEIYSKGYEKLSKH 297
           N+ L  +IV+SP+KLQ ALEEKK    E K AE+ A  + QEK A LE++ K  +K+ K 
Sbjct: 233 NANLRSQIVQSPDKLQGALEEKKLVLGETKKAEQSAMVTFQEKAAILEVFEKALKKILKS 292

Query: 298 STKIQALQEQVTATKALEKEVKARKTKISDESVEIMALDTKIIEWDGKVHEMEEHVKAKE 357
           S+++Q + EQVT  K +EKE KA K K+S++ V   +L+ K++E +  V ++ E +K  E
Sbjct: 293 SSQLQLINEQVTNAKTVEKEFKALKDKLSEDGVAYKSLEAKVVERERIVEQLNESLKQLE 352

Query: 358 KKKDQIVADENQKLAALSSEVEWKLKCLEPRERKVEETIAKATKLCAEVDSTRTDAAEEL 417
           K+K  +  D  ++L  L  EVE + + LE R+  VE  +A      A+ +  R     ++
Sbjct: 353 KEKAVMFDDWTKQLNELKVEVESRRRELETRQTNVESVVAMVDDNTAKTNQVRQSGEAKV 412

Query: 418 QLIYAKFQQIGHAFTCYKDNFKSFL 442
           + + AK+++I   F  Y  +F +FL
Sbjct: 413 KKLAAKYEEIVKQFHEYTVSFDAFL 437



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.127    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,896,977
Number of extensions: 347895
Number of successful extensions: 2324
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 2355
Number of HSP's successfully gapped: 54
Length of query: 470
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 368
Effective length of database: 8,310,137
Effective search space: 3058130416
Effective search space used: 3058130416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)