Os08g0158500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Stomatin-like protein.
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Os08g0158500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Stomatin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.02 | 0.257 | 10.3 | 0.299 | 0.349 | -0.862 | 0.0695 | 1.61 | 0.0562 | 15.7 | 8.36 | 318 | -- | -- |
| 31.01 | 0.259 | 10.3 | 0.0562 | 0.318 | -0.839 | 0.363 | -- | -0.00691 | 16.3 | 13.41 | 454 | -- | -- |
| 29.73 | 0.254 | 10.3 | 0.327 | 0.325 | -0.86 | -- | 1.7 | 0.0632 | 16 | 14.3 | 404 | -- | -- |
| 31.36 | 0.261 | 10.3 | 0.0592 | 0.313 | -0.831 | -- | -- | -0.00635 | 16.5 | 13.18 | 474 | -- | -- |
| 30.85 | 0.259 | 10.3 | 0.293 | -- | -0.746 | -- | 1.02 | 0.0497 | -- | 13.92 | 1093 | -- | -- |
| 38.84 | 0.292 | 10.3 | -0.138 | 0.157 | -- | 0.293 | -- | -0.131 | 13.5 | -- | -- | -- | -- |
| 39.19 | 0.293 | 10.3 | -0.128 | 0.158 | -- | -- | -- | -0.13 | 13.6 | -- | -- | -- | -- |
| 31.72 | 0.262 | 10.3 | 0.0813 | -- | -0.735 | -- | -- | -0.00694 | -- | 10 | 1073 | -- | -- |
| 31.44 | 0.261 | 10.3 | -- | 0.306 | -0.803 | -- | -- | -0.0164 | 16.5 | 12.41 | 474 | -- | -- |
| 40.7 | 0.298 | 10.3 | -0.134 | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
| 39.62 | 0.294 | 10.3 | -- | 0.16 | -- | -- | -- | -0.115 | 13.7 | -- | -- | -- | -- |
| 31.88 | 0.263 | 10.3 | -- | -- | -0.702 | -- | -- | -0.0207 | -- | 9.594 | 1071 | -- | -- |
| 41.18 | 0.3 | 10.3 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 33 | 27.03 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 35 | 27.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 17 |
| 45 | 27.29 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 56 | 27.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 57 | 27.68 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 66 | 27.85 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 68 | 27.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 16 |
| 69 | 27.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 96 | 28.11 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 110 | 28.18 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 124 | 28.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 125 | 28.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 137 | 28.37 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 139 | 28.38 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 146 | 28.40 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 152 | 28.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 157 | 28.44 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 158 | 28.44 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 159 | 28.44 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 192 | 28.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 8 |
| 193 | 28.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 194 | 28.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 197 | 28.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 201 | 28.59 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 7 |
| 203 | 28.59 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 208 | 28.59 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 209 | 28.59 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 7 |
| 232 | 28.64 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 243 | 28.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 246 | 28.74 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 261 | 28.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 269 | 28.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 17 |
| 292 | 28.88 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 293 | 28.89 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 16 |
| 296 | 28.90 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 318 | 28.99 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 324 | 29.01 | humidity | 90.0 | 270 | < th | dose independent | rect. | 10 | 8 |
| 331 | 29.03 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 332 | 29.04 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 353 | 29.10 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 17 | 7 |
| 356 | 29.11 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 363 | 29.13 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 16 |
| 366 | 29.13 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 386 | 29.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 400 | 29.22 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 22 |
| 402 | 29.23 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 410 | 29.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 7 |
| 412 | 29.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 7 |
| 423 | 29.29 | radiation | 10.0 | 10 | < th | dose independent | rect. | 1 | 18 |
| 444 | 29.33 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 455 | 29.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 7 |
| 457 | 29.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 464 | 29.39 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 492 | 29.44 | radiation | 1.0 | 90 | < th | dose dependent | sin | 15 | NA |
| 514 | 29.49 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 515 | 29.49 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 538 | 29.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 543 | 29.53 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 10 | 17 |
| 548 | 29.54 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 549 | 29.54 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 550 | 29.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 553 | 29.54 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 569 | 29.57 | radiation | 1.0 | 270 | < th | dose dependent | sin | 19 | NA |
| 583 | 29.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 17 |
| 588 | 29.60 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 17 |
| 601 | 29.61 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 1 | 18 |
| 602 | 29.61 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 609 | 29.63 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 626 | 29.66 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 630 | 29.66 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 635 | 29.66 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 17 |
| 638 | 29.67 | radiation | 1.0 | 270 | < th | dose independent | sin | 19 | NA |
| 650 | 29.69 | radiation | 1.0 | 270 | > th | dose independent | sin | 19 | NA |
| 667 | 29.71 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 5 |
| 701 | 29.74 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 730 | 29.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 754 | 29.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 7 |
| 758 | 29.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 762 | 29.81 | radiation | 1.0 | 90 | > th | dose independent | sin | 15 | NA |
| 763 | 29.81 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 765 | 29.81 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 9 |
| 793 | 29.84 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 794 | 29.84 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 798 | 29.84 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 828 | 29.87 | radiation | 1.0 | 90 | < th | dose independent | sin | 15 | NA |
| 849 | 29.88 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 18 | 9 |
| 881 | 29.91 | radiation | 10.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 931 | 29.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 932 | 29.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 935 | 29.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 936 | 29.95 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 951 | 29.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 17 |