Os08g0157100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase II associated, Paf1 family protein.
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Os08g0157100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA polymerase II associated, Paf1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.47 | 0.179 | 10.7 | 0.471 | 0.111 | -0.662 | -0.504 | 1.35 | 0.216 | 18.3 | 19.53 | 412 | -- | -- |
| 15.37 | 0.183 | 10.7 | 0.246 | 0.0896 | -0.658 | -0.091 | -- | 0.161 | 21.1 | 16.45 | 517 | -- | -- |
| 14.96 | 0.18 | 10.7 | 0.438 | 0.0929 | -0.659 | -- | 1.07 | 0.197 | 18.2 | 18.11 | 425 | -- | -- |
| 15.29 | 0.182 | 10.7 | 0.232 | 0.0991 | -0.737 | -- | -- | 0.148 | 20.4 | 14.9 | 517 | -- | -- |
| 15.21 | 0.182 | 10.7 | 0.349 | -- | -0.646 | -- | 0.797 | 0.169 | -- | 16 | 420 | -- | -- |
| 21.46 | 0.217 | 10.8 | 0.0636 | 0.115 | -- | 0.303 | -- | 0.036 | 5.81 | -- | -- | -- | -- |
| 21.67 | 0.218 | 10.8 | 0.0653 | 0.117 | -- | -- | -- | 0.0346 | 5.4 | -- | -- | -- | -- |
| 15.66 | 0.184 | 10.8 | 0.211 | -- | -0.667 | -- | -- | 0.131 | -- | 13.62 | 426 | -- | -- |
| 16.58 | 0.19 | 10.8 | -- | 0.0639 | -0.645 | -- | -- | 0.109 | 19.6 | 14.14 | 436 | -- | -- |
| 22.39 | 0.221 | 10.8 | 0.0692 | -- | -- | -- | -- | 0.0375 | -- | -- | -- | -- | -- |
| 21.78 | 0.218 | 10.8 | -- | 0.118 | -- | -- | -- | 0.0274 | 5.37 | -- | -- | -- | -- |
| 16.75 | 0.191 | 10.8 | -- | -- | -0.579 | -- | -- | 0.0994 | -- | 15.1 | 411 | -- | -- |
| 22.51 | 0.221 | 10.8 | -- | -- | -- | -- | -- | 0.0298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.19 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 4 | 13.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 5 | 13.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 13 | 13.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 15 | 13.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 40 | 13.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 44 | 13.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 77 | 14.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 176 | 14.30 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 208 | 14.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 216 | 14.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 249 | 14.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 265 | 14.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 271 | 14.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 274 | 14.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 15 |
| 278 | 14.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 312 | 14.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 6 |
| 370 | 14.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 376 | 14.59 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 397 | 14.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 466 | 14.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 520 | 14.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 526 | 14.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 554 | 14.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 652 | 14.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 655 | 14.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 658 | 14.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 705 | 14.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 726 | 14.87 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |