BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0157100 Os08g0157100|AK106701
         (451 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79730.1  | chr1:30000743-30003969 REVERSE LENGTH=590          455   e-128

>AT1G79730.1 | chr1:30000743-30003969 REVERSE LENGTH=590
          Length = 589

 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/410 (57%), Positives = 299/410 (72%), Gaps = 10/410 (2%)

Query: 50  ERFENRLKKPTTFLCKHKFRNELPDPSSQLKWLPLNKDKDRYTKYRITSLEKNYIPKMIV 109
           +R ENRLKKPTTF+CK KFRNELPDPS+QLK + + +DKD++TKY ITSLEK + PK+ V
Sbjct: 182 DRVENRLKKPTTFICKLKFRNELPDPSAQLKLMTIKRDKDQFTKYTITSLEKLWKPKIFV 241

Query: 110 PEDLGIPLDLLDMSVYNTPPVQPPMAPXXXXXXXXXXXXTPVKKDGIRKKERPTDKGMSW 169
             DLGIPLDLLD+SVYN P V+ P+AP            TP+KKDGIR+KERPTDKGMSW
Sbjct: 242 EPDLGIPLDLLDLSVYNPPKVKAPLAPEDEELLRDDDAVTPIKKDGIRRKERPTDKGMSW 301

Query: 170 LVKTQYISPLSTDAAKMSITEKQAKERRESREGRNTFLENINDREKQIKAIEDSFRAAKS 229
           LVKTQYIS ++ ++A+ S+TEKQAKE RE + G N  L N+N+RE+QIK IE SF A KS
Sbjct: 302 LVKTQYISSINNESARQSLTEKQAKELREMKGGIN-ILHNLNNRERQIKDIEASFEACKS 360

Query: 230 RPVHQTKRGMEAEWVLPLLPDFDRYDDQFVMVNFDGDPTADSEQYNKLERSERDECESRA 289
           RPVH T + ++   VLPLLP FDRYD+QFV+ NFDG P ADSE + KL+ S RD  ESRA
Sbjct: 361 RPVHATNKNLQPVEVLPLLPYFDRYDEQFVVANFDGAPIADSEFFGKLDPSIRDAHESRA 420

Query: 290 VMKSFLVNGSDPAKQEKFLAYMVPSPHELSKDLDDETEDIQYSWLREYHWEVRGDDKDDP 349
           ++KS++V GSD A  EKFLAYMVPS  ELSKD+ DE E+I Y+W+REY W+V+  + +DP
Sbjct: 421 ILKSYVVAGSDTANPEKFLAYMVPSLDELSKDIHDENEEISYTWVREYLWDVQ-PNANDP 479

Query: 350 TTYLVTFDDDGAKYLPLPTKLVLQKKKAKEGRSGDEIEHFPVPSRITVSRTAHGGMMEHG 409
            TYLV+FD+  A YLPLP +L L+KK+A+EGRS DEIEHFPVPSR+TV R +   ++EH 
Sbjct: 480 GTYLVSFDNGTASYLPLPMRLNLRKKRAREGRSSDEIEHFPVPSRVTVRRRSTVSVIEHK 539

Query: 410 ESSSMHENL-----KRQRSSVDDDLYDHPKHSRVEDMDQYSG---DEYSD 451
           +S      +     K +R   +  L    KH   +D +QYS    D+YS+
Sbjct: 540 DSGVYSSRVGASSSKMRRLEDEGGLGRSWKHEPEQDANQYSDGNEDDYSE 589



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,922,371
Number of extensions: 452560
Number of successful extensions: 1065
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1065
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 349
Effective length of database: 8,310,137
Effective search space: 2900237813
Effective search space used: 2900237813
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)