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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0144100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Avr9/Cf-9 rapidly elicited protein 31.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0457) R2 : 0.108
β1 : -0.118 (0.163) R2dD : 0.000866 R2D : -0.0208
β2 : -- (--) R2dC : -- R2C : --
β3 : 18.5 (2.73) R2dE : 2.52 R2E : -2
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -44.1 (7.09) R2dD*E : 2.1 R2D*E : -2.4
γ1 : 0.0148 (0.0913) R2dN8 : 3.76e-05 R2N8 : -0.0166
σ : 0.799
deviance : 294.05
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : -0.0008088
memory length : 7
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 13.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
293.2 0.805 2.99 -0.117 0.181 18.6 0.138 -44.3 0.0107 14.3 0.1669 8 13.2 --
325.93 0.847 2.89 0.217 0.183 0.244 0.397 -- -0.0202 15.3 0.9987 3 0.667 --
293.23 0.798 2.99 -0.117 0.184 18.7 -- -44.6 0.0122 14.6 0.1187 7 13.2 --
326.37 0.847 2.89 0.224 0.187 0.294 -- -- -0.0174 15.6 -0.001492 118 1.06 --
294.05 0.799 2.99 -0.118 -- 18.5 -- -44.1 0.0148 -- -0.0008088 7 13.2 --
325.99 0.846 2.89 0.219 0.181 -- 0.386 -- -0.0206 15.3 -- -- -- --
326.46 0.846 2.89 0.227 0.184 -- -- -- -0.0182 15.5 -- -- -- --
316.77 0.829 2.92 0.0825 -- 2.36 -- -- -0.0397 -- -0.02664 61 16.9 --
305.81 0.814 2.94 -- 0.27 4.97 -- -- -0.0565 15.1 1.499 50 22.7 --
328.34 0.847 2.89 0.219 -- -- -- -- -0.0231 -- -- -- -- --
327.81 0.847 2.89 -- 0.179 -- -- -- -0.0435 15.6 -- -- -- --
305.23 0.814 2.89 -- -- 4.94 -- -- -0.0336 -- 1.521 62 22.6 --
329.61 0.847 2.89 -- -- -- -- -- -0.0474 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 297.62 precipitation 0.1 10 > th dose independent sin 18 NA
3 298.02 precipitation 0.1 10 > th dose dependent sin 19 NA
4 298.59 precipitation 0.1 10 < th dose independent sin 18 NA
5 298.59 precipitation 0.1 10 < th dose dependent sin 18 NA
9 299.16 wind 3.0 90 > th dose independent rect. 4 1
10 299.66 atmosphere 1000.0 90 < th dose independent rect. 16 6
11 300.33 temperature 25.0 30 < th dose dependent rect. 17 1
27 301.95 wind 3.0 90 > th dose dependent rect. 4 1
28 302.10 precipitation 0.1 10 > th dose independent rect. 17 9
48 302.10 precipitation 0.1 10 > th dose dependent rect. 17 9
78 302.25 precipitation 0.1 90 > th dose dependent rect. 14 6
80 302.35 precipitation 0.1 90 > th dose independent rect. 15 3
86 302.44 precipitation 0.1 90 > th dose dependent rect. 17 2
87 302.45 precipitation 0.1 90 > th dose independent rect. 17 2
92 302.55 precipitation 0.1 10 > th dose independent rect. 17 1
121 302.55 precipitation 0.1 10 > th dose dependent rect. 17 1
152 302.63 atmosphere 1000.0 90 < th dose independent rect. 16 1
197 302.93 atmosphere 1000.0 90 < th dose dependent rect. 16 1
230 304.16 precipitation 0.1 10 > th dose independent rect. 17 6
241 304.16 precipitation 0.1 10 > th dose dependent rect. 17 6
251 304.20 atmosphere 1000.0 90 < th dose dependent rect. 16 6
253 304.27 temperature 20.0 90 < th dose dependent rect. 4 2
300 304.53 wind 5.0 90 > th dose independent rect. 17 5
301 304.54 temperature 20.0 90 < th dose dependent rect. 4 16
361 305.54 temperature 20.0 10 < th dose dependent rect. 6 1
364 305.56 temperature 20.0 10 < th dose dependent rect. 5 16
412 305.77 wind 5.0 90 > th dose dependent rect. 17 5
418 305.80 temperature 20.0 90 < th dose dependent rect. 4 7
427 305.85 precipitation 0.1 90 > th dose dependent rect. 23 19
428 305.88 precipitation 0.1 90 > th dose dependent rect. 1 17
447 306.36 atmosphere 1000.0 1440 < th dose dependent rect. 10 1
488 307.16 temperature 20.0 10 < th dose dependent rect. 5 8
497 307.22 precipitation 0.1 90 > th dose dependent rect. 20 22
566 308.01 atmosphere 1000.0 10 < th dose independent rect. 8 2
568 308.03 atmosphere 1000.0 90 < th dose independent rect. 8 1
580 308.10 wind 5.0 90 > th dose independent rect. 17 18
581 308.19 atmosphere 1000.0 10 < th dose independent rect. 6 5
583 308.20 atmosphere 1000.0 270 < th dose independent rect. 6 1
593 308.26 precipitation 0.1 90 > th dose dependent sin 22 NA
598 308.29 wind 5.0 90 > th dose independent rect. 17 2
599 308.38 atmosphere 1000.0 10 < th dose independent rect. 4 7
625 308.64 wind 5.0 90 > th dose dependent rect. 17 18
638 308.94 humidity 90.0 90 > th dose independent rect. 17 1
641 309.05 atmosphere 1000.0 90 < th dose dependent rect. 9 1
656 309.23 wind 5.0 90 > th dose dependent rect. 17 2
681 309.63 atmosphere 1000.0 720 > th dose independent rect. 6 7
683 309.69 temperature 20.0 90 < th dose dependent sin 0 NA
684 309.73 humidity 90.0 30 < th dose independent rect. 5 1
685 309.73 atmosphere 1000.0 30 < th dose dependent rect. 6 5
692 309.84 atmosphere 1000.0 270 < th dose dependent rect. 6 1
695 309.88 atmosphere 1000.0 4320 > th dose independent rect. 9 1
703 309.91 atmosphere 1000.0 4320 < th dose independent rect. 9 1
710 309.92 wind 5.0 90 > th dose dependent rect. 17 16
711 309.93 atmosphere 1000.0 4320 < th dose independent rect. 6 7
713 309.94 atmosphere 1000.0 4320 > th dose independent rect. 6 7
783 310.21 wind 1.0 90 > th dose dependent rect. 4 19
799 310.25 wind 5.0 90 > th dose independent rect. 17 16
821 310.32 wind 7.0 1440 > th dose independent rect. 18 16
825 310.33 atmosphere 1000.0 4320 < th dose independent rect. 12 1
842 310.38 atmosphere 1000.0 4320 > th dose independent rect. 11 3
845 310.39 temperature 25.0 30 < th dose independent rect. 17 1
850 310.39 atmosphere 1000.0 270 < th dose dependent rect. 14 6
864 310.47 atmosphere 1000.0 270 < th dose independent rect. 14 5
884 310.53 atmosphere 1000.0 30 < th dose dependent rect. 4 7
903 310.58 wind 7.0 1440 > th dose dependent rect. 18 16
945 310.73 atmosphere 1000.0 4320 > th dose independent rect. 20 1
947 310.74 wind 9.0 1440 < th dose independent rect. 20 10
949 310.75 wind 7.0 1440 > th dose independent rect. 18 6
977 310.83 atmosphere 1000.0 4320 < th dose independent sin 2 NA
979 310.83 atmosphere 1000.0 4320 < th dose independent rect. 20 1
988 310.85 atmosphere 1000.0 4320 > th dose independent sin 2 NA