Os08g0138700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine-specific protein kinase-like protein.
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Os08g0138700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine-specific protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.54 | 0.507 | 7.19 | -2.37 | 1.11 | 1.4 | -1.02 | -5.14 | -0.159 | 11.1 | 25.6 | 1400 | -- | -- |
| 120.5 | 0.511 | 7.05 | -1.04 | 1.21 | 1.21 | -0.953 | -- | -0.00194 | 11.2 | 19.31 | 1206 | -- | -- |
| 120.61 | 0.511 | 7.18 | -2.51 | 1.12 | 1.43 | -- | -5.61 | -0.107 | 11 | 26.31 | 1418 | -- | -- |
| 124.14 | 0.519 | 7.05 | -1.09 | 1.21 | 1.21 | -- | -- | -0.0144 | 11.2 | 19.6 | 1206 | -- | -- |
| 193.69 | 0.648 | 7.23 | -2.55 | -- | 1.47 | -- | -6.29 | -0.128 | -- | 26.35 | 1534 | -- | -- |
| 159.23 | 0.592 | 6.99 | -0.648 | 1.05 | -- | -1.01 | -- | 0.26 | 11 | -- | -- | -- | -- |
| 163.54 | 0.599 | 7 | -0.69 | 1.05 | -- | -- | -- | 0.255 | 10.9 | -- | -- | -- | -- |
| 182.15 | 0.631 | 7.08 | -1.05 | -- | 1.86 | -- | -- | 0.000357 | -- | 14.41 | 1533 | -- | -- |
| 152.11 | 0.574 | 7.02 | -- | 1.18 | 0.85 | -- | -- | 0.187 | 11.2 | 21.39 | 1230 | -- | -- |
| 232.21 | 0.712 | 7.02 | -0.712 | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
| 176.09 | 0.621 | 6.98 | -- | 1.06 | -- | -- | -- | 0.332 | 10.9 | -- | -- | -- | -- |
| 209.62 | 0.677 | 7.04 | -- | -- | 1.53 | -- | -- | 0.154 | -- | 14.41 | 1533 | -- | -- |
| 245.59 | 0.731 | 7 | -- | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 3 | 107.43 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 4 | 107.69 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 16 | 108.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 17 | 108.84 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 41 | 109.42 | wind | 5 | 43200 | > th | dose independent | sin | 17 | NA |
| 50 | 109.60 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 16 |
| 93 | 110.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 98 | 110.18 | wind | 5 | 43200 | < th | dose independent | sin | 17 | NA |
| 142 | 110.58 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 156 | 110.72 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 173 | 110.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 198 | 111.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 202 | 111.12 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 206 | 111.15 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 211 | 111.20 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 237 | 111.37 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 257 | 111.51 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 268 | 111.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 303 | 111.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 317 | 111.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 336 | 112.02 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 338 | 112.05 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 357 | 112.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 398 | 112.37 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 15 |
| 492 | 112.83 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 533 | 112.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 611 | 113.27 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 620 | 113.30 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 719 | 113.62 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 739 | 113.69 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 782 | 113.80 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 797 | 113.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 804 | 113.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 836 | 114.01 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 897 | 114.24 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 942 | 114.37 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 991 | 114.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 993 | 114.51 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |