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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0129600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0183) R2 : 0.0529
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.194 (0.0385) R2dN8 : 0.0683 R2N8 : 0.0529
σ : 0.344
deviance : 54.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.47 0.337 2.97 -0.0635 0.0796 -0.233 -0.106 1.28 0.181 8.64 1.14 16 -- --
53.08 0.339 2.96 -0.00304 0.0848 -0.149 -0.115 -- 0.199 8.36 1.1 16 -- --
51.51 0.334 2.97 -0.0671 0.0792 -0.237 -- 1.28 0.182 9.02 1.127 16 -- --
53.11 0.339 2.96 -0.00625 0.0897 -0.141 -- -- 0.196 8.41 1.2 16 -- --
51.86 0.335 2.98 -0.0705 -- -0.252 -- 1.31 0.181 -- 1.123 16 -- --
53.5 0.343 2.96 0.0151 0.118 -- -0.231 -- 0.193 6.67 -- -- -- --
53.62 0.343 2.96 0.012 0.118 -- -- -- 0.194 7.17 -- -- -- --
53.55 0.341 2.96 -0.009 -- -0.161 -- -- 0.197 -- 1.178 15 -- --
53.11 0.339 2.96 -- 0.0904 -0.14 -- -- 0.197 8.46 1.198 15 -- --
54.35 0.344 2.96 0.0142 -- -- -- -- 0.196 -- -- -- -- --
53.62 0.343 2.96 -- 0.118 -- -- -- 0.192 7.17 -- -- -- --
53.55 0.341 2.96 -- -- -0.16 -- -- 0.198 -- 1.176 15 -- --
54.36 0.344 2.96 -- -- -- -- -- 0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.43 temperature 20.0 30 > th dose dependent rect. 2 1
2 46.46 temperature 20.0 30 > th dose independent rect. 2 1
4 46.48 atmosphere 1005.0 30 > th dose dependent rect. 2 1
5 46.49 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 46.54 wind 5.0 30 < th dose dependent rect. 2 1
11 46.55 wind 3.0 30 < th dose independent rect. 2 1
15 46.56 humidity 80.0 30 > th dose independent rect. 2 1
18 46.57 humidity 50.0 30 > th dose dependent rect. 2 1
21 46.58 temperature 10.0 30 > th dose independent rect. 2 1
23 46.58 temperature 30.0 30 < th dose independent rect. 2 1
24 46.58 humidity 50.0 30 > th dose independent rect. 2 1
28 46.58 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 46.58 radiation 1.0 30 < th dose independent rect. 2 1
35 46.58 precipitation 0.1 30 < th dose independent rect. 2 1
36 46.58 temperature 10.0 30 > th dose independent rect. 3 23
38 46.58 radiation 1.0 30 < th dose dependent rect. 2 1
43 46.58 precipitation 0.1 30 < th dose dependent rect. 2 1
48 46.77 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 46.87 temperature 30.0 30 < th dose dependent rect. 2 1
51 46.89 temperature 25.0 30 > th dose independent rect. 20 1
52 46.89 radiation 40.0 14400 < th dose dependent rect. 21 1
54 46.90 temperature 10.0 1440 > th dose independent rect. 21 1
57 46.90 temperature 30.0 1440 < th dose independent rect. 21 1
61 46.90 humidity 50.0 1440 > th dose independent rect. 21 1
67 46.90 atmosphere 995.0 1440 > th dose independent rect. 21 1
68 46.90 radiation 1.0 1440 < th dose independent rect. 21 1
88 46.90 temperature 10.0 1440 > th dose independent rect. 22 23
94 46.92 wind 1.0 30 > th dose independent rect. 2 1
97 46.94 temperature 25.0 30 > th dose dependent rect. 20 1
100 46.96 wind 3.0 30 > th dose independent rect. 20 1
107 47.01 atmosphere 1005.0 30 > th dose dependent rect. 20 1
110 47.05 humidity 80.0 30 > th dose independent rect. 20 1
112 47.06 humidity 90.0 30 < th dose independent rect. 20 1
120 47.11 radiation 1.0 4320 < th dose dependent rect. 3 1
122 47.13 wind 1.0 30 > th dose dependent rect. 20 1
135 47.14 wind 9.0 1440 < th dose independent rect. 3 1
136 47.14 wind 5.0 30 < th dose independent rect. 20 1
137 47.14 temperature 10.0 1440 > th dose independent rect. 3 1
141 47.14 temperature 30.0 1440 < th dose independent rect. 3 1
145 47.14 humidity 50.0 1440 > th dose independent rect. 3 1
154 47.14 atmosphere 995.0 1440 > th dose independent rect. 3 1
155 47.14 radiation 1.0 1440 < th dose independent rect. 3 1
175 47.14 temperature 10.0 1440 > th dose independent rect. 4 23
188 47.16 temperature 10.0 30 > th dose independent rect. 20 1
190 47.16 temperature 30.0 30 < th dose independent rect. 20 1
191 47.16 humidity 50.0 30 > th dose independent rect. 20 1
194 47.16 atmosphere 995.0 30 > th dose independent rect. 20 1
195 47.16 atmosphere 1010.0 30 < th dose independent rect. 20 1
197 47.16 radiation 1.0 30 < th dose independent rect. 20 1
202 47.16 precipitation 0.1 30 < th dose independent rect. 20 1
203 47.16 temperature 10.0 30 > th dose independent rect. 21 23
205 47.16 radiation 1.0 30 < th dose dependent rect. 20 1
210 47.16 precipitation 0.1 30 < th dose dependent rect. 20 1
211 47.17 atmosphere 1005.0 30 > th dose independent rect. 20 1
213 47.18 humidity 50.0 30 > th dose dependent rect. 20 1
216 47.23 wind 9.0 30 < th dose dependent rect. 20 1
233 47.40 atmosphere 1015.0 30 < th dose dependent rect. 20 1
253 47.43 humidity 90.0 30 < th dose dependent rect. 20 1
266 47.75 wind 9.0 30 < th dose independent rect. 3 23
267 47.75 atmosphere 995.0 30 > th dose independent rect. 3 23
276 47.85 temperature 30.0 30 < th dose dependent rect. 20 1
282 47.92 wind 9.0 1440 < th dose independent rect. 21 1
287 48.01 wind 9.0 30 < th dose independent rect. 21 23
288 48.01 precipitation 0.1 30 < th dose independent rect. 3 23
291 48.01 precipitation 0.1 30 < th dose dependent rect. 3 23
348 49.19 humidity 50.0 30 > th dose independent rect. 3 23
416 50.36 humidity 90.0 90 < th dose independent rect. 2 1
429 50.60 temperature 30.0 30 < th dose independent rect. 3 23
432 50.63 atmosphere 995.0 30 > th dose independent rect. 21 23
452 50.83 wind 1.0 10 > th dose independent rect. 9 23
455 50.87 wind 1.0 10 > th dose independent rect. 21 23
457 50.89 atmosphere 1015.0 30 < th dose independent rect. 3 23
493 51.22 wind 1.0 30 > th dose independent rect. 3 23
533 51.26 precipitation 0.1 30 < th dose independent rect. 21 23
535 51.26 precipitation 0.1 30 < th dose dependent rect. 21 23
548 51.32 radiation 10.0 30 < th dose independent rect. 3 23
568 51.38 temperature 25.0 270 > th dose independent rect. 23 4
571 51.39 wind 1.0 10 > th dose independent rect. 22 9
577 51.42 wind 1.0 10 < th dose independent rect. 2 5
629 51.51 wind 1.0 10 < th dose independent rect. 6 21
639 51.56 atmosphere 1005.0 30 > th dose dependent rect. 2 7
648 51.60 wind 1.0 10 > th dose independent sin 14 NA
678 51.61 radiation 20.0 30 < th dose dependent rect. 3 23
698 51.65 temperature 10.0 30 > th dose dependent rect. 3 23
727 51.74 humidity 90.0 10 > th dose independent rect. 24 3
738 51.75 wind 9.0 30 < th dose dependent rect. 3 23
791 51.80 wind 3.0 30 < th dose dependent rect. 2 7
823 51.86 humidity 90.0 90 < th dose independent rect. 1 8
875 51.90 wind 1.0 10 > th dose independent rect. 16 15
879 51.91 atmosphere 995.0 720 > th dose independent rect. 23 16
893 51.93 radiation 10.0 30 < th dose independent rect. 21 11
918 51.98 atmosphere 1000.0 10 > th dose independent rect. 16 10
927 52.00 precipitation 0.1 720 < th dose independent rect. 15 8
931 52.00 precipitation 0.1 720 < th dose dependent rect. 15 8
932 52.01 wind 1.0 10 > th dose independent no NA NA
933 52.01 radiation 10.0 10 < th dose independent rect. 16 10
945 52.02 wind 9.0 10 < th dose independent rect. 16 10
946 52.02 temperature 30.0 10 < th dose independent rect. 2 14
947 52.02 precipitation 0.1 90 < th dose independent rect. 7 14
951 52.02 precipitation 0.1 90 < th dose dependent rect. 7 14
960 52.03 temperature 20.0 90 > th dose dependent rect. 1 8
961 52.03 radiation 40.0 90 < th dose dependent rect. 21 10
964 52.04 temperature 10.0 720 > th dose independent rect. 15 8
965 52.04 wind 9.0 90 < th dose independent rect. 21 10
966 52.04 temperature 10.0 90 > th dose independent rect. 21 10
967 52.04 temperature 30.0 90 < th dose independent rect. 21 10
968 52.04 humidity 50.0 90 > th dose independent rect. 21 10
972 52.04 atmosphere 995.0 90 > th dose independent rect. 21 10
973 52.04 radiation 30.0 90 < th dose independent rect. 21 10
975 52.04 radiation 10.0 10 < th dose independent rect. 14 12
976 52.04 temperature 10.0 90 > th dose independent rect. 7 14
977 52.04 atmosphere 1015.0 90 < th dose independent rect. 7 14
979 52.04 temperature 10.0 720 > th dose independent rect. 23 16
990 52.05 precipitation 0.1 10 < th dose independent rect. 2 14
997 52.05 precipitation 0.1 10 < th dose dependent rect. 2 14
999 52.06 humidity 50.0 10 > th dose independent rect. 16 10
1000 52.06 precipitation 0.1 90 < th dose independent rect. 21 10