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Os08g0129200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cold shock protein-1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.5 (0.0233) R2 : 0.689
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.93 (0.0606) R2dC : 0.69 R2C : 0.686
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0879 (0.0491) R2dN8 : 0.00282 R2N8 : -0.00136
σ : 0.44
deviance : 88.41
__
_____
C
peak time of C : 16.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.27 0.391 15.5 0.619 1.71 -0.737 0.218 0.351 0.11 17.8 43.75 123 -- --
69.53 0.388 15.5 0.612 1.71 -0.78 0.157 -- 0.109 17.8 48.71 125 -- --
69.35 0.388 15.5 0.619 1.71 -0.745 -- 0.312 0.112 17.8 45.78 127 -- --
69.59 0.389 15.5 0.62 1.71 -0.783 -- -- 0.112 17.8 50.36 125 -- --
97.09 0.459 15.4 0.381 -- -1.98 -- 1.74 0.0621 -- 3.728 591 -- --
77.73 0.413 15.5 0.637 1.94 -- -0.0164 -- 0.159 16.8 -- -- -- --
77.73 0.413 15.5 0.637 1.94 -- -- -- 0.159 16.8 -- -- -- --
86.44 0.433 15.5 0.433 -- -2.08 -- -- 0.0852 -- 0.3012 613 -- --
79.58 0.415 15.5 -- 1.68 -0.771 -- -- 0.0577 17.8 44.61 127 -- --
275.84 0.776 15.5 0.565 -- -- -- -- 0.109 -- -- -- -- --
88.41 0.44 15.5 -- 1.93 -- -- -- 0.0879 16.8 -- -- -- --
91.66 0.446 15.5 -- -- -2.02 -- -- 0.0563 -- 0.009995 611 -- --
284.25 0.787 15.5 -- -- -- -- -- 0.046 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.62 precipitation 0.1 270 < th dose independent rect. 3 16
2 53.62 precipitation 0.1 270 < th dose dependent rect. 3 16
3 54.31 temperature 10.0 270 > th dose independent rect. 19 8
4 54.31 temperature 30.0 270 < th dose independent rect. 19 8
5 54.31 humidity 50.0 270 > th dose independent rect. 19 8
6 54.31 atmosphere 995.0 270 > th dose independent rect. 19 8
7 54.31 radiation 1.0 270 < th dose independent rect. 19 8
12 54.31 temperature 10.0 270 > th dose independent rect. 3 16
13 54.31 atmosphere 1015.0 270 < th dose independent rect. 3 16
14 54.31 radiation 1.0 270 < th dose dependent rect. 19 8
20 54.39 wind 9.0 270 < th dose independent rect. 19 8
21 54.52 wind 5.0 270 < th dose independent rect. 1 8
22 54.52 wind 9.0 270 < th dose independent rect. 7 8
24 54.64 precipitation 0.1 270 < th dose independent rect. 19 8
25 54.64 precipitation 0.1 270 < th dose dependent rect. 19 8
26 54.66 precipitation 0.1 270 < th dose independent rect. 15 16
27 54.66 precipitation 0.1 270 < th dose dependent rect. 15 16
28 54.69 precipitation 0.1 270 < th dose independent rect. 1 8
29 54.69 precipitation 0.1 270 < th dose dependent rect. 1 8
30 54.71 radiation 40.0 270 < th dose independent rect. 15 16
31 54.77 temperature 10.0 270 > th dose independent rect. 7 8
32 54.77 atmosphere 1015.0 270 < th dose independent rect. 7 8
33 54.77 temperature 10.0 270 > th dose independent rect. 15 16
37 54.82 radiation 30.0 270 < th dose independent rect. 1 8
38 54.83 precipitation 0.1 270 < th dose independent rect. 7 8
39 54.83 precipitation 0.1 270 < th dose dependent rect. 7 8
42 54.91 wind 9.0 270 < th dose independent rect. 15 16
43 55.05 wind 9.0 270 < th dose independent rect. 3 16
45 55.16 atmosphere 995.0 270 > th dose independent rect. 7 8
48 55.39 radiation 40.0 90 < th dose independent rect. 3 8
49 55.43 temperature 10.0 270 > th dose independent rect. 20 6
50 55.43 temperature 30.0 270 < th dose independent rect. 20 6
51 55.43 humidity 50.0 270 > th dose independent rect. 20 6
54 55.43 atmosphere 995.0 270 > th dose independent rect. 20 6
55 55.43 radiation 1.0 270 < th dose independent rect. 20 6
61 55.43 temperature 10.0 270 > th dose independent rect. 2 18
62 55.43 atmosphere 1015.0 270 < th dose independent rect. 2 18
63 55.43 radiation 1.0 270 < th dose dependent rect. 20 6
87 55.49 wind 9.0 270 < th dose independent rect. 20 6
88 55.50 precipitation 0.1 270 < th dose independent rect. 20 6
90 55.50 wind 9.0 270 < th dose independent rect. 9 16
91 55.50 precipitation 0.1 270 < th dose dependent rect. 20 6
94 55.57 humidity 50.0 270 > th dose dependent rect. 20 6
95 55.58 temperature 30.0 270 < th dose independent rect. 1 8
100 55.67 atmosphere 995.0 270 > th dose independent rect. 15 16
101 55.68 temperature 10.0 270 > th dose independent rect. 1 8
103 55.68 humidity 50.0 270 > th dose independent rect. 1 8
104 55.68 atmosphere 995.0 270 > th dose independent rect. 1 8
105 55.68 atmosphere 1015.0 270 < th dose independent rect. 1 8
106 55.68 temperature 10.0 270 > th dose independent rect. 9 16
111 55.84 atmosphere 995.0 270 > th dose independent rect. 3 16
114 55.90 humidity 50.0 270 > th dose independent rect. 7 8
139 55.97 wind 9.0 270 < th dose independent rect. 2 18
146 56.11 precipitation 0.1 270 < th dose independent rect. 9 16
147 56.11 precipitation 0.1 270 < th dose dependent rect. 9 16
157 56.22 atmosphere 995.0 270 > th dose independent rect. 2 18
159 56.27 wind 1.0 270 > th dose independent rect. 7 8
164 56.38 wind 9.0 90 < th dose dependent rect. 3 6
165 56.39 wind 9.0 270 < th dose dependent rect. 1 8
169 56.53 precipitation 0.1 90 < th dose independent rect. 3 6
171 56.53 precipitation 0.1 90 < th dose dependent rect. 3 6
175 56.63 radiation 40.0 270 < th dose dependent rect. 2 7
178 56.74 atmosphere 1015.0 270 < th dose independent rect. 13 8
183 56.83 wind 9.0 270 < th dose independent rect. 21 16
186 56.85 humidity 50.0 270 > th dose dependent rect. 21 4
188 56.88 radiation 1.0 270 > th dose independent rect. 7 8
191 56.92 temperature 10.0 270 > th dose independent rect. 13 8
192 56.92 temperature 10.0 270 > th dose independent rect. 21 16
193 56.92 atmosphere 995.0 270 > th dose independent rect. 21 16
198 56.96 humidity 50.0 270 > th dose independent rect. 21 16
212 57.08 humidity 60.0 90 > th dose independent rect. 3 6
227 57.17 temperature 30.0 90 < th dose independent rect. 3 6
228 57.17 wind 1.0 270 > th dose independent rect. 13 8
234 57.18 precipitation 0.1 270 < th dose independent rect. 1 20
235 57.18 precipitation 0.1 270 < th dose dependent rect. 1 20
237 57.19 temperature 10.0 90 > th dose independent rect. 3 6
240 57.19 atmosphere 995.0 90 > th dose independent rect. 3 6
241 57.19 atmosphere 1015.0 90 < th dose independent rect. 3 6
245 57.22 precipitation 0.1 90 < th dose independent rect. 9 18
246 57.22 precipitation 0.1 90 < th dose dependent rect. 9 18
250 57.25 temperature 10.0 270 > th dose dependent rect. 2 6
254 57.31 atmosphere 1015.0 270 < th dose independent rect. 15 16
257 57.35 radiation 40.0 90 < th dose independent rect. 3 19
261 57.37 wind 9.0 270 < th dose independent rect. 13 8
272 57.50 wind 5.0 270 < th dose independent rect. 3 3
284 57.52 atmosphere 1015.0 270 < th dose independent rect. 1 20
292 57.58 precipitation 0.1 270 < th dose independent rect. 13 8
293 57.58 precipitation 0.1 270 < th dose dependent rect. 13 8
294 57.59 temperature 10.0 270 > th dose independent rect. 21 4
295 57.59 temperature 30.0 270 < th dose independent rect. 21 4
296 57.59 humidity 50.0 270 > th dose independent rect. 21 4
299 57.59 atmosphere 995.0 270 > th dose independent rect. 21 4
300 57.59 radiation 1.0 270 < th dose independent rect. 21 4
305 57.59 temperature 10.0 270 > th dose independent rect. 1 20
306 57.59 radiation 1.0 270 < th dose dependent rect. 21 4
311 57.60 wind 9.0 90 < th dose dependent rect. 3 8
312 57.63 wind 9.0 270 < th dose independent rect. 21 4
317 57.66 precipitation 0.1 270 < th dose independent rect. 21 4
320 57.66 precipitation 0.1 270 < th dose dependent rect. 21 4
359 57.91 radiation 40.0 270 < th dose dependent rect. 15 16
391 58.01 humidity 50.0 10 > th dose dependent rect. 22 6
392 58.02 radiation 40.0 270 < th dose independent rect. 13 8
395 58.03 atmosphere 995.0 270 > th dose independent rect. 13 8
404 58.08 precipitation 0.1 270 < th dose independent rect. 21 16
405 58.08 precipitation 0.1 270 < th dose dependent rect. 21 16
420 58.17 wind 9.0 270 < th dose independent rect. 1 20
528 58.40 atmosphere 1000.0 10 > th dose independent rect. 22 6
551 58.53 wind 1.0 270 > th dose independent rect. 20 6
552 58.54 precipitation 0.1 270 < th dose independent rect. 3 3
556 58.54 precipitation 0.1 270 < th dose dependent rect. 3 3
575 58.60 wind 9.0 270 < th dose dependent rect. 20 6
581 58.63 radiation 40.0 10 < th dose dependent rect. 4 18
584 58.64 radiation 40.0 270 < th dose dependent rect. 2 17
593 58.68 wind 9.0 10 < th dose independent rect. 22 6
594 58.68 temperature 10.0 10 > th dose independent rect. 22 6
595 58.68 temperature 30.0 10 < th dose independent rect. 22 6
596 58.68 humidity 50.0 10 > th dose independent rect. 22 6
600 58.68 radiation 1.0 10 < th dose independent rect. 22 6
607 58.68 temperature 10.0 10 > th dose independent rect. 4 18
609 58.68 atmosphere 1015.0 10 < th dose independent rect. 4 18
610 58.68 atmosphere 995.0 270 > th dose independent rect. 1 20
611 58.68 radiation 1.0 10 < th dose dependent rect. 22 6
627 58.70 precipitation 0.1 10 < th dose independent rect. 4 18
629 58.70 precipitation 0.1 10 < th dose dependent rect. 4 18
640 58.73 radiation 40.0 90 < th dose dependent rect. 3 19
651 58.80 atmosphere 995.0 270 > th dose independent rect. 14 6
718 58.99 wind 9.0 270 < th dose dependent rect. 21 4
730 59.04 wind 9.0 10 < th dose independent rect. 4 18
731 59.04 atmosphere 995.0 270 > th dose dependent rect. 20 6
781 59.15 atmosphere 995.0 10 > th dose independent rect. 4 18
843 59.27 wind 7.0 10 < th dose dependent rect. 4 5
867 59.34 wind 5.0 10 < th dose independent rect. 4 5
869 59.34 humidity 60.0 270 > th dose dependent rect. 23 1
882 59.39 atmosphere 995.0 270 > th dose independent rect. 9 16
884 59.39 wind 9.0 90 < th dose dependent rect. 3 18
890 59.42 radiation 20.0 10 < th dose independent rect. 4 18
923 59.50 temperature 10.0 270 > th dose independent rect. 3 3
925 59.50 temperature 30.0 270 < th dose independent rect. 3 3
926 59.50 humidity 50.0 270 > th dose independent rect. 3 3
929 59.50 atmosphere 995.0 270 > th dose independent rect. 3 3
930 59.50 atmosphere 1015.0 270 < th dose independent rect. 3 3
950 59.51 humidity 50.0 270 > th dose dependent rect. 1 8
986 59.57 humidity 50.0 270 > th dose independent rect. 8 18
988 59.57 humidity 50.0 270 > th dose dependent rect. 2 6