BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0129200 Os08g0129200|AK101577
(197 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36020.1 | chr4:17043443-17044342 REVERSE LENGTH=300 107 3e-24
AT2G17870.1 | chr2:7764276-7765181 REVERSE LENGTH=302 103 6e-23
AT2G21060.1 | chr2:9036983-9037588 REVERSE LENGTH=202 96 1e-20
AT4G38680.1 | chr4:18072240-18072851 REVERSE LENGTH=204 89 1e-18
>AT4G36020.1 | chr4:17043443-17044342 REVERSE LENGTH=300
Length = 299
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 65/82 (79%), Gaps = 5/82 (6%)
Query: 1 MASE-----RVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFS 55
MASE R G V WF+A+KG+GFITPDDG +LFVHQSS+ S+GYRSL GD VEF+
Sbjct: 1 MASEDQSAARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFA 60
Query: 56 VGSGNDGRTKAVDVTAPGGGAL 77
+ G+DG+TKAV+VTAPGGG+L
Sbjct: 61 ITQGSDGKTKAVNVTAPGGGSL 82
>AT2G17870.1 | chr2:7764276-7765181 REVERSE LENGTH=302
Length = 301
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 61/78 (78%)
Query: 1 MASERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGN 60
++ R G V WF KG+GFITPDDGGE+LFVHQSS+ SDG+RSL G+ VE+ + G+
Sbjct: 6 QSAARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGS 65
Query: 61 DGRTKAVDVTAPGGGALT 78
DG+TKA++VTAPGGG+L
Sbjct: 66 DGKTKAIEVTAPGGGSLN 83
>AT2G21060.1 | chr2:9036983-9037588 REVERSE LENGTH=202
Length = 201
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%)
Query: 4 ERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGR 63
+R KGTVKWFD KGFGFITP DGG+DLFVHQSS++S+G+RSL + VEF V N GR
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72
Query: 64 TKAVDVTAPGGGAL 77
KA++V+ P G +
Sbjct: 73 PKAIEVSGPDGAPV 86
>AT4G38680.1 | chr4:18072240-18072851 REVERSE LENGTH=204
Length = 203
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 57/74 (77%)
Query: 4 ERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGR 63
ER KG+VKWFD KGFGFITPDDGG+DLFVHQSS++S+G+RSL + VEF V N+ R
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68
Query: 64 TKAVDVTAPGGGAL 77
KA+DV+ P G +
Sbjct: 69 PKAIDVSGPDGAPV 82
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,809,591
Number of extensions: 89746
Number of successful extensions: 393
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 9
Length of query: 197
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 104
Effective length of database: 8,556,881
Effective search space: 889915624
Effective search space used: 889915624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)