Os08g0127500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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Os08g0127500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.74 | 0.234 | 8.9 | -0.8 | 1.77 | -0.198 | -0.617 | -0.636 | -0.158 | 5.13 | 25.61 | 37 | -- | -- |
| 26.07 | 0.238 | 8.89 | -0.622 | 1.77 | -0.21 | -0.337 | -- | -0.119 | 5.12 | 25.7 | 30 | -- | -- |
| 25.56 | 0.235 | 8.9 | -0.759 | 1.77 | -0.195 | -- | -0.47 | -0.149 | 5.12 | 25.7 | 29 | -- | -- |
| 26.33 | 0.239 | 8.88 | -0.633 | 1.77 | -0.213 | -- | -- | -0.103 | 5.11 | 25.64 | 32 | -- | -- |
| 120.5 | 0.511 | 8.89 | -0.614 | -- | -1.2 | -- | -0.86 | 0.23 | -- | 26.3 | 278 | -- | -- |
| 28.97 | 0.252 | 8.91 | -0.696 | 1.92 | -- | -0.232 | -- | -0.2 | 4.98 | -- | -- | -- | -- |
| 29.11 | 0.253 | 8.9 | -0.695 | 1.92 | -- | -- | -- | -0.199 | 4.97 | -- | -- | -- | -- |
| 116.51 | 0.503 | 8.86 | -0.344 | -- | -1.16 | -- | -- | 0.205 | -- | 25.9 | 278 | -- | -- |
| 36.57 | 0.282 | 8.87 | -- | 1.7 | -0.278 | -- | -- | -0.00124 | 5.1 | 25.6 | 45 | -- | -- |
| 222.36 | 0.697 | 8.92 | -0.625 | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
| 41.84 | 0.303 | 8.89 | -- | 1.9 | -- | -- | -- | -0.122 | 4.98 | -- | -- | -- | -- |
| 119.1 | 0.508 | 8.83 | -- | -- | -1.21 | -- | -- | 0.256 | -- | 25.83 | 278 | -- | -- |
| 232.67 | 0.712 | 8.91 | -- | -- | -- | -- | -- | -0.0804 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.02 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 14 |
| 3 | 24.23 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 14 |
| 7 | 24.32 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 11 |
| 9 | 24.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 12 | 24.43 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 11 |
| 15 | 24.46 | radiation | 10 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 16 | 24.47 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 19 |
| 31 | 24.62 | radiation | 10 | 270 | < th | dose independent | rect. | 8 | 21 |
| 32 | 24.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 46 | 24.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 50 | 24.69 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 67 | 24.78 | temperature | 25 | 90 | > th | dose independent | sin | 0 | NA |
| 86 | 24.85 | temperature | 25 | 10 | > th | dose independent | sin | 23 | NA |
| 99 | 24.89 | radiation | 10 | 270 | < th | dose independent | rect. | 13 | 16 |
| 102 | 24.90 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 19 |
| 115 | 24.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 137 | 24.98 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 3 | 12 |
| 150 | 25.02 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 14 |
| 160 | 25.04 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 19 |
| 161 | 25.04 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 22 |
| 164 | 25.05 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 165 | 25.05 | radiation | 10 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 166 | 25.05 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 17 |
| 204 | 25.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 233 | 25.14 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 21 |
| 281 | 25.21 | wind | 5 | 720 | < th | dose independent | rect. | 5 | 5 |
| 294 | 25.23 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 312 | 25.25 | radiation | 10 | 720 | < th | dose independent | rect. | 8 | 14 |
| 333 | 25.26 | radiation | 10 | 720 | < th | dose dependent | rect. | 7 | 15 |
| 354 | 25.29 | radiation | 40 | 270 | < th | dose dependent | sin | 12 | NA |
| 362 | 25.30 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 23 |
| 396 | 25.33 | radiation | 40 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 451 | 25.36 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 452 | 25.36 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 458 | 25.37 | temperature | 25 | 30 | > th | dose dependent | sin | 2 | NA |
| 459 | 25.37 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 466 | 25.37 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 20 |
| 473 | 25.38 | temperature | 20 | 30 | > th | dose dependent | sin | 0 | NA |
| 514 | 25.40 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 23 |
| 531 | 25.41 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 6 |
| 541 | 25.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 557 | 25.42 | radiation | 1 | 270 | > th | dose dependent | sin | 12 | NA |
| 558 | 25.42 | wind | 9 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 604 | 25.44 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 16 |
| 640 | 25.46 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 649 | 25.46 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 698 | 25.49 | temperature | 25 | 90 | > th | dose independent | no | NA | NA |
| 699 | 25.49 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 6 |
| 734 | 25.50 | wind | 9 | 720 | < th | dose independent | rect. | 22 | 19 |
| 763 | 25.51 | temperature | 15 | 720 | > th | dose independent | rect. | 17 | 5 |
| 770 | 25.51 | radiation | 10 | 270 | > th | dose independent | rect. | 13 | 21 |
| 773 | 25.51 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 794 | 25.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 799 | 25.52 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 12 |
| 826 | 25.53 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 12 |
| 860 | 25.54 | temperature | 25 | 90 | < th | dose independent | no | NA | NA |
| 869 | 25.54 | temperature | 25 | 90 | < th | dose independent | rect. | 21 | 23 |
| 899 | 25.55 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 23 |
| 929 | 25.56 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 23 |
| 952 | 25.56 | temperature | 25 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 974 | 25.58 | humidity | 50 | 720 | > th | dose independent | rect. | 17 | 5 |