BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0127500 Os08g0127500|AK071322
(184 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67600.1 | chr1:25336701-25337455 REVERSE LENGTH=164 205 1e-53
AT1G24350.3 | chr1:8639098-8640313 REVERSE LENGTH=187 193 4e-50
AT3G21610.1 | chr3:7609377-7610601 REVERSE LENGTH=175 177 2e-45
AT3G61770.1 | chr3:22864635-22866248 FORWARD LENGTH=285 124 3e-29
AT3G12685.1 | chr3:4029245-4030261 REVERSE LENGTH=214 76 8e-15
>AT1G67600.1 | chr1:25336701-25337455 REVERSE LENGTH=164
Length = 163
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/146 (67%), Positives = 112/146 (76%)
Query: 23 APSFSYLAALGNCPLVAAVLAGAIAQFIKVLTTWYKENRWDAKQLVGSGGMPSSHSXXXX 82
+ S Y++ N PL++AVLA IAQFIK T+WYKE RWD K+LVGSGGMPSSHS
Sbjct: 7 SSSSHYISIFTNYPLISAVLAFTIAQFIKFFTSWYKERRWDLKRLVGSGGMPSSHSATVT 66
Query: 83 XXXXXXGLQEGFGSSLFATAAIFASVVMYDAFGVRLHAGKQAEVLNQIVYELPSEHPLAE 142
GLQEGFG S FA A + ++VMYDA GVRLHAG+QAEVLNQIVYELP+EHPLAE
Sbjct: 67 ALALAVGLQEGFGGSHFAIALVLTTIVMYDATGVRLHAGRQAEVLNQIVYELPAEHPLAE 126
Query: 143 TRPLRELLGHTPAQVFAGGVLGFAVA 168
TRPLRELLGHTP QV AGG+LG + A
Sbjct: 127 TRPLRELLGHTPPQVIAGGMLGISTA 152
>AT1G24350.3 | chr1:8639098-8640313 REVERSE LENGTH=187
Length = 186
Score = 193 bits (491), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/130 (69%), Positives = 102/130 (78%)
Query: 28 YLAALGNCPLVAAVLAGAIAQFIKVLTTWYKENRWDAKQLVGSGGMPSSHSXXXXXXXXX 87
Y + N PL++AV + IAQFIK+ T+WY+E RWD KQL+GSGGMPSSHS
Sbjct: 16 YFSIFTNYPLISAVTSFTIAQFIKLFTSWYRERRWDLKQLIGSGGMPSSHSATVTALAVA 75
Query: 88 XGLQEGFGSSLFATAAIFASVVMYDAFGVRLHAGKQAEVLNQIVYELPSEHPLAETRPLR 147
GLQEGFG S FA A I ASVVMYDA GVRLHAG+QAEVLNQIVYELP+EHPLAE+RPLR
Sbjct: 76 IGLQEGFGGSHFAIALILASVVMYDATGVRLHAGRQAEVLNQIVYELPAEHPLAESRPLR 135
Query: 148 ELLGHTPAQV 157
ELLGHTP Q+
Sbjct: 136 ELLGHTPPQI 145
>AT3G21610.1 | chr3:7609377-7610601 REVERSE LENGTH=175
Length = 174
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 99/135 (73%)
Query: 34 NCPLVAAVLAGAIAQFIKVLTTWYKENRWDAKQLVGSGGMPSSHSXXXXXXXXXXGLQEG 93
N P+ +A LA A+AQF+KV T WYKE RWD+K+++ SGGMPSSHS G +EG
Sbjct: 33 NLPIFSAFLAFALAQFLKVFTNWYKEKRWDSKRMISSGGMPSSHSATVTALAVAIGFEEG 92
Query: 94 FGSSLFATAAIFASVVMYDAFGVRLHAGKQAEVLNQIVYELPSEHPLAETRPLRELLGHT 153
G+ FA A + A VVMYDA GVRLHAG+QAE+LNQIV E P EHPL+ RPLRELLGHT
Sbjct: 93 AGAPAFAIAVVLACVVMYDASGVRLHAGRQAELLNQIVCEFPPEHPLSTVRPLRELLGHT 152
Query: 154 PAQVFAGGVLGFAVA 168
P QV AGG+LG VA
Sbjct: 153 PIQVAAGGILGCVVA 167
>AT3G61770.1 | chr3:22864635-22866248 FORWARD LENGTH=285
Length = 284
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 28 YLAALGNCP-LVAAVLAGAIAQFIKVLTTWYKENRWDAKQLVGSGGMPSSHSXXXXXXXX 86
++A L P V+AV+A AQ K++ ++ E +WD + L SGGMPSSHS
Sbjct: 133 FVATLSANPTFVSAVVAWFFAQSSKMVINFFIERKWDFRLLYASGGMPSSHSALCMALTT 192
Query: 87 XXGLQEGFGSSLFATAAIFASVVMYDAFGVRLHAGKQAEVLNQIVYELPSEHPLAETRPL 146
L G SLF F+ +VMYDA GVR HAG QAEVLN I+ +L HP+++ R L
Sbjct: 193 SVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVLNLIIRDLFEGHPISQ-RKL 251
Query: 147 RELLGHTPAQVFAGGVLGFAVATFT 171
+ELLGHTP+QV AG ++G +A F
Sbjct: 252 KELLGHTPSQVLAGALVGIVIACFC 276
>AT3G12685.1 | chr3:4029245-4030261 REVERSE LENGTH=214
Length = 213
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 21/156 (13%)
Query: 32 LGNCPLVAAVLAGAIAQFIKVLTT--WYKENRWDAKQLVGSGGMPSSHSXXXXXXXXXXG 89
+ N L+AA + I Q K T+ Y +N D + + +GG PS+HS
Sbjct: 51 IHNKVLIAAGTSAVIGQLSKPFTSVVLYGKN-LDFRSVFQAGGFPSTHSSSVVAAATAIA 109
Query: 90 LQEGFGSSLFATAAIFASVVMYDAFGVRLHAGKQAEVLNQIVYE---------------- 133
+ GF S+F ++A ++MYDA GVR GK A+VLN++
Sbjct: 110 FERGFADSIFGLTVVYAGLIMYDAQGVRREVGKHAKVLNKLTANARRSEVMSLKGNESNK 169
Query: 134 -LPSEHPLAETR-PLRELLGHTPAQVFAGGVLGFAV 167
L SE E PL+E +GHT +V AG + GF V
Sbjct: 170 ALTSEEISEEIAPPLKESIGHTEVEVIAGALFGFLV 205
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,628,231
Number of extensions: 129452
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 5
Length of query: 184
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 92
Effective length of database: 8,584,297
Effective search space: 789755324
Effective search space used: 789755324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)