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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0125300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0369) R2 : 0.722
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.34 (0.186) R2dE : 0.0364 R2E : -0.295
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.76 (0.081) R2dN8 : 1.02 R2N8 : 0.685
σ : 0.686
deviance : 216.7
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.47
memory length : 18
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.02
open length of G : 5.68

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.06 0.656 3.12 0.462 0.499 -1 -0.546 6.76 2.93 2.46 25 28 0.868 6.75
208.67 0.673 3.14 0.29 0.5 -1.11 -0.151 -- 2.83 1.94 25 25 0.916 6.7
195.91 0.652 3.12 0.483 0.506 -0.99 -- 6.36 2.94 2.51 25 30 0.853 6.73
207.71 0.671 3.12 0.1 0.465 -1.16 -- -- 2.84 2.32 25 25 0.932 6.49
207.08 0.67 3.11 0.474 -- -0.939 -- 6.72 2.92 -- 25.2 21 0.95 6.8
231.36 0.713 3.19 0.0547 0.395 -- -0.449 -- 2.58 23.6 -- -- -- --
232.21 0.714 3.19 0.0721 0.397 -- -- -- 2.58 23.9 -- -- -- --
217.47 0.687 3.13 0.0874 -- -1.17 -- -- 2.84 -- 25.2 21 1.99 5.67
205.9 0.668 3.12 -- 0.506 -1.33 -- -- 2.83 2.3 25.13 21 0.917 6.44
242.12 0.727 3.18 0.084 -- -- -- -- 2.59 -- -- -- -- --
232.35 0.713 3.19 -- 0.398 -- -- -- 2.58 23.9 -- -- -- --
216.7 0.686 3.14 -- -- -1.34 -- -- 2.76 -- 25.47 18 2.02 5.68
242.31 0.727 3.18 -- -- -- -- -- 2.58 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.54 temperature 25.0 30 > th dose independent rect. 1 6
2 197.56 temperature 25.0 30 > th dose independent rect. 4 3
10 200.03 wind 3.0 30 < th dose independent rect. 6 1
11 200.07 atmosphere 995.0 30 > th dose dependent rect. 6 1
13 200.11 wind 7.0 30 < th dose dependent rect. 6 1
16 200.13 humidity 70.0 30 > th dose dependent rect. 6 1
20 200.22 wind 1.0 30 > th dose independent rect. 6 1
22 200.24 radiation 1.0 30 > th dose dependent rect. 6 1
24 200.25 humidity 90.0 10 < th dose independent rect. 6 1
29 200.27 temperature 10.0 30 > th dose independent rect. 6 1
31 200.27 temperature 30.0 30 < th dose independent rect. 6 1
32 200.27 humidity 50.0 30 > th dose independent rect. 6 1
35 200.27 atmosphere 995.0 30 > th dose independent rect. 6 1
37 200.27 atmosphere 1015.0 30 < th dose independent rect. 6 1
38 200.27 radiation 20.0 30 < th dose independent rect. 6 1
41 200.27 precipitation 0.1 30 < th dose independent rect. 6 1
42 200.27 temperature 10.0 30 > th dose independent rect. 7 23
43 200.27 atmosphere 995.0 30 > th dose independent rect. 7 23
44 200.27 temperature 30.0 30 < th dose dependent rect. 6 1
45 200.27 precipitation 0.1 30 < th dose dependent rect. 6 1
46 200.34 wind 9.0 1440 < th dose independent rect. 7 1
47 200.34 temperature 10.0 1440 > th dose independent rect. 7 1
51 200.34 temperature 30.0 1440 < th dose independent rect. 7 1
55 200.34 humidity 50.0 1440 > th dose independent rect. 7 1
60 200.34 atmosphere 995.0 1440 > th dose independent rect. 7 1
61 200.34 atmosphere 1015.0 1440 < th dose independent rect. 7 1
62 200.34 temperature 10.0 1440 > th dose independent rect. 8 23
71 200.39 radiation 40.0 10 < th dose dependent rect. 6 1
72 200.40 precipitation 0.1 10 < th dose independent rect. 7 23
74 200.40 precipitation 0.1 10 < th dose dependent rect. 7 23
76 200.42 radiation 1.0 30 > th dose independent rect. 6 1
103 200.58 temperature 10.0 30 > th dose dependent rect. 6 1
132 201.73 humidity 90.0 10 < th dose dependent rect. 6 1
135 202.04 atmosphere 1015.0 30 < th dose dependent rect. 6 1
143 202.97 temperature 20.0 90 > th dose dependent rect. 4 3
149 203.48 humidity 50.0 30 > th dose independent rect. 7 23
152 203.72 humidity 90.0 30 < th dose independent rect. 4 3
155 204.02 wind 9.0 30 < th dose independent rect. 7 23
162 204.22 wind 1.0 30 > th dose dependent rect. 6 1
172 205.35 radiation 1.0 30 > th dose dependent rect. 18 13
201 206.02 radiation 1.0 90 > th dose independent rect. 18 13
205 206.17 temperature 25.0 10 > th dose independent rect. 22 10
226 206.79 humidity 90.0 30 < th dose independent rect. 2 5
258 207.46 temperature 30.0 30 < th dose independent rect. 7 23
265 207.94 atmosphere 1015.0 30 < th dose independent rect. 7 23
281 208.68 atmosphere 1005.0 270 > th dose dependent rect. 3 1
298 209.52 temperature 25.0 14400 > th dose dependent rect. 4 1
314 210.12 temperature 25.0 10 > th dose dependent rect. 1 6
320 210.25 humidity 90.0 10 < th dose dependent rect. 4 3
323 210.31 temperature 30.0 14400 > th dose dependent rect. 8 1
365 210.78 temperature 30.0 14400 > th dose independent rect. 8 1
383 211.00 temperature 30.0 14400 > th dose dependent rect. 18 1
401 211.07 temperature 25.0 14400 > th dose independent rect. 4 1
407 211.30 radiation 40.0 1440 < th dose independent rect. 7 1
408 211.34 temperature 25.0 14400 < th dose independent rect. 4 1
410 211.36 temperature 25.0 10 > th dose dependent rect. 22 9
420 211.60 temperature 30.0 14400 < th dose independent rect. 19 14
422 211.63 atmosphere 1005.0 90 > th dose dependent rect. 24 7
424 211.65 temperature 30.0 14400 < th dose independent rect. 21 12
433 211.76 temperature 30.0 14400 < th dose independent rect. 2 7
460 212.15 wind 5.0 90 < th dose independent rect. 21 10
534 213.10 radiation 1.0 90 > th dose independent rect. 9 22
548 213.30 temperature 30.0 14400 < th dose independent rect. 18 11
571 213.45 temperature 30.0 14400 < th dose independent rect. 18 4
575 213.48 temperature 30.0 14400 < th dose independent rect. 18 7
578 213.51 temperature 30.0 14400 < th dose independent rect. 18 2
590 213.65 wind 7.0 720 < th dose independent rect. 19 12
685 214.21 temperature 30.0 14400 > th dose independent rect. 18 1
701 214.22 temperature 10.0 30 > th dose dependent rect. 7 23
837 215.13 temperature 25.0 720 > th dose independent rect. 3 4
970 216.35 wind 1.0 90 > th dose independent rect. 7 14
971 216.35 precipitation 0.1 90 < th dose independent rect. 7 14
972 216.35 precipitation 0.1 90 < th dose dependent rect. 7 14
981 216.47 wind 1.0 90 > th dose independent rect. 21 10
988 216.51 radiation 1.0 90 > th dose independent rect. 12 19
989 216.51 radiation 40.0 90 < th dose independent rect. 7 22
991 216.52 temperature 25.0 720 > th dose dependent rect. 6 1