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Os08g0119700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CCT domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.42 (0.0229) R2 : 0.548
β1 : 1.29 (0.084) R2dD : 0.243 R2D : 0.285
β2 : 1.12 (0.0836) R2dC : 0.378 R2C : -0.262
β3 : 1.76 (0.111) R2dE : 0.527 R2E : -0.116
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.159 (0.049) R2dN8 : 0.014 R2N8 : 0.0239
σ : 0.428
deviance : 84.56
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_____
C
peak time of C : 3.29
E
wheather : radiation
threshold : 1.557
memory length : 87
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 10.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.09 0.431 8.42 1.28 1.13 1.77 0.242 -0.283 -0.159 3.29 1.55 89 10.2 --
84.13 0.427 8.43 1.29 1.12 1.77 0.364 -- -0.162 3.29 1.55 87 10.2 --
84.18 0.427 8.43 1.28 1.13 1.78 -- -0.571 -0.163 3.3 1.56 88 10.2 --
84.56 0.428 8.42 1.29 1.12 1.76 -- -- -0.159 3.29 1.557 87 10.2 --
114.98 0.499 8.41 1.38 -- 0.943 -- -0.689 -0.115 -- 9.43 129 8.65 --
128.23 0.531 8.42 1.37 0.246 -- 0.201 -- -0.104 23.7 -- -- -- --
128.4 0.531 8.42 1.37 0.245 -- -- -- -0.105 23.5 -- -- -- --
114.35 0.498 8.42 1.37 -- 0.899 -- -- -0.134 -- 9.79 126 8.54 --
128.23 0.527 8.45 -- 1.22 1.83 -- -- -0.295 3.28 1.523 91 10.4 --
132.17 0.537 8.42 1.37 -- -- -- -- -0.102 -- -- -- -- --
177.54 0.623 8.46 -- 0.261 -- -- -- -0.257 23.9 -- -- -- --
160.3 0.59 8.46 -- -- 1.09 -- -- -0.294 -- 12.35 140 8.18 --
181.84 0.629 8.45 -- -- -- -- -- -0.255 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.72 wind 7.0 270 < th dose independent rect. 11 5
2 77.01 radiation 1.0 270 > th dose independent rect. 11 6
6 77.19 wind 7.0 270 < th dose independent rect. 13 2
9 77.87 precipitation 0.1 270 < th dose independent rect. 11 5
10 77.87 precipitation 0.1 270 < th dose dependent rect. 11 5
13 77.95 temperature 10.0 270 > th dose independent rect. 11 5
14 77.95 atmosphere 1015.0 270 < th dose independent rect. 11 5
15 77.95 temperature 10.0 270 > th dose independent rect. 16 19
16 78.05 wind 9.0 270 < th dose dependent rect. 13 2
20 78.08 temperature 10.0 270 > th dose dependent rect. 11 5
23 78.60 wind 9.0 270 < th dose independent rect. 16 19
25 78.82 radiation 1.0 270 > th dose independent rect. 13 2
33 79.22 wind 9.0 270 < th dose dependent rect. 11 6
35 79.38 temperature 10.0 270 > th dose independent rect. 13 2
37 79.38 atmosphere 1010.0 270 < th dose independent rect. 13 2
39 79.38 temperature 10.0 270 > th dose independent rect. 15 22
41 79.39 atmosphere 995.0 270 > th dose independent rect. 17 18
44 79.48 precipitation 0.1 270 < th dose independent rect. 13 2
45 79.48 humidity 50.0 270 > th dose independent rect. 17 18
46 79.48 precipitation 0.1 270 < th dose dependent rect. 13 2
47 79.49 temperature 15.0 270 > th dose independent rect. 6 15
49 79.50 precipitation 0.1 270 < th dose independent rect. 17 18
52 79.50 precipitation 0.1 270 < th dose dependent rect. 17 18
62 79.76 radiation 1.0 90 > th dose independent rect. 13 16
76 79.93 temperature 10.0 90 > th dose dependent rect. 13 5
82 80.24 atmosphere 995.0 270 > th dose independent rect. 11 5
83 80.24 wind 7.0 270 < th dose independent rect. 21 9
88 80.74 temperature 15.0 270 > th dose independent rect. 5 7
90 80.79 atmosphere 995.0 270 > th dose independent rect. 13 2
99 81.00 wind 1.0 270 > th dose independent rect. 11 5
111 81.26 humidity 90.0 90 < th dose independent rect. 13 5
133 81.86 wind 9.0 270 < th dose independent rect. 15 22
148 82.23 wind 7.0 270 < th dose independent rect. 12 17
150 82.26 precipitation 0.1 270 < th dose independent rect. 21 9
151 82.26 precipitation 0.1 270 < th dose dependent rect. 21 9
154 82.43 temperature 10.0 270 > th dose independent rect. 21 9
155 82.43 temperature 30.0 270 < th dose independent rect. 21 9
156 82.43 humidity 50.0 270 > th dose independent rect. 21 9
159 82.43 atmosphere 995.0 270 > th dose independent rect. 21 9
160 82.43 radiation 20.0 270 < th dose independent rect. 21 9
166 82.52 wind 9.0 270 < th dose independent rect. 1 15
174 82.84 temperature 10.0 270 > th dose independent rect. 16 9
175 82.84 radiation 40.0 270 < th dose independent rect. 16 9
176 82.84 temperature 10.0 270 > th dose independent rect. 1 15
177 82.84 atmosphere 1015.0 270 < th dose independent rect. 1 15
180 82.93 radiation 40.0 270 < th dose dependent rect. 21 9
181 83.00 wind 1.0 270 > th dose independent rect. 13 2
187 83.16 precipitation 0.1 270 < th dose independent rect. 1 15
188 83.16 precipitation 0.1 270 < th dose dependent rect. 1 15
194 83.33 atmosphere 1015.0 270 < th dose dependent rect. 13 2
200 83.41 humidity 50.0 270 > th dose independent rect. 13 2
215 83.80 radiation 1.0 270 > th dose independent rect. 17 19
218 83.84 precipitation 0.1 270 < th dose independent rect. 15 22
219 83.84 precipitation 0.1 270 < th dose dependent rect. 15 22
220 83.85 precipitation 0.1 270 < th dose independent rect. 6 15
221 83.85 precipitation 0.1 270 < th dose dependent rect. 6 15
223 83.87 humidity 50.0 270 > th dose independent rect. 12 4
228 83.91 atmosphere 1015.0 270 < th dose independent rect. 6 15
231 83.95 temperature 30.0 270 < th dose independent rect. 5 7
238 84.00 wind 9.0 270 < th dose independent rect. 16 9
241 84.05 wind 1.0 90 > th dose independent rect. 18 19
296 84.57 precipitation 0.1 270 < th dose independent rect. 5 6
298 84.57 precipitation 0.1 270 < th dose dependent rect. 5 6
300 84.61 radiation 40.0 270 < th dose independent rect. 17 18
305 84.74 atmosphere 995.0 270 > th dose independent rect. 5 6
306 84.74 atmosphere 1015.0 270 < th dose independent rect. 5 6
307 84.74 temperature 10.0 270 > th dose independent rect. 11 18
308 84.77 wind 9.0 270 < th dose independent rect. 5 6
310 84.81 wind 9.0 270 < th dose independent rect. 6 15
313 84.89 precipitation 0.1 270 < th dose independent rect. 11 18
314 84.89 precipitation 0.1 270 < th dose dependent rect. 11 18
317 84.98 atmosphere 1015.0 90 < th dose dependent rect. 13 5
339 85.11 humidity 50.0 270 > th dose independent rect. 5 6
353 85.28 wind 1.0 270 > th dose independent rect. 16 9
362 85.36 radiation 1.0 90 > th dose independent sin 16 NA
365 85.40 wind 1.0 90 > th dose independent rect. 6 7
370 85.42 wind 1.0 270 > th dose independent rect. 16 19
384 85.53 precipitation 0.1 270 < th dose independent rect. 16 9
385 85.53 precipitation 0.1 270 < th dose dependent rect. 16 9
388 85.55 temperature 10.0 1440 > th dose independent rect. 14 5
392 85.55 temperature 10.0 1440 > th dose independent rect. 19 19
395 85.55 atmosphere 995.0 1440 > th dose independent rect. 19 19
396 85.59 temperature 30.0 90 < th dose independent rect. 18 19
416 85.76 atmosphere 995.0 270 > th dose independent rect. 1 15
433 85.82 radiation 1.0 30 < th dose dependent sin 15 NA
435 85.85 radiation 1.0 90 < th dose independent sin 16 NA
450 85.98 radiation 1.0 90 < th dose dependent sin 17 NA
521 86.74 wind 1.0 270 > th dose independent rect. 6 15
522 86.74 temperature 10.0 270 > th dose dependent rect. 1 15
542 86.97 wind 9.0 270 < th dose independent rect. 23 17
543 87.00 atmosphere 995.0 270 > th dose independent rect. 16 9
552 87.04 radiation 40.0 30 < th dose independent rect. 12 6
570 87.27 radiation 1.0 270 > th dose independent rect. 6 5
571 87.28 radiation 1.0 90 > th dose independent rect. 6 7
573 87.29 wind 9.0 270 < th dose dependent rect. 21 9
575 87.30 radiation 1.0 270 > th dose independent rect. 4 7
593 87.37 temperature 10.0 270 > th dose independent rect. 16 7
594 87.37 radiation 40.0 270 < th dose independent rect. 16 7
596 87.37 temperature 10.0 270 > th dose independent rect. 23 17
599 87.39 atmosphere 1015.0 90 < th dose independent rect. 18 19
630 87.71 wind 9.0 270 < th dose dependent rect. 12 17
635 87.76 precipitation 0.1 270 < th dose independent rect. 23 17
636 87.76 precipitation 0.1 270 < th dose dependent rect. 23 17
666 87.95 atmosphere 1015.0 270 < th dose independent rect. 23 17
670 87.96 wind 1.0 270 > th dose independent rect. 16 7
699 88.14 wind 9.0 270 < th dose independent rect. 16 7
701 88.14 wind 9.0 270 < th dose dependent rect. 11 19
709 88.20 radiation 40.0 270 < th dose dependent rect. 16 9
797 88.76 precipitation 0.1 270 < th dose independent rect. 16 7
798 88.76 precipitation 0.1 270 < th dose dependent rect. 16 7
811 88.92 atmosphere 995.0 270 > th dose independent rect. 11 18
837 89.04 wind 1.0 270 > th dose independent rect. 4 8
847 89.08 atmosphere 995.0 270 > th dose independent rect. 6 15
873 89.33 radiation 40.0 270 < th dose dependent rect. 16 7
888 89.44 radiation 1.0 270 > th dose independent rect. 10 20
896 89.53 humidity 90.0 270 < th dose dependent rect. 12 3
898 89.54 humidity 50.0 270 > th dose dependent rect. 21 9
917 89.69 atmosphere 995.0 270 > th dose independent rect. 23 17
926 89.75 wind 9.0 10 < th dose independent rect. 13 17
928 89.77 atmosphere 995.0 270 > th dose independent rect. 16 7
937 89.83 humidity 90.0 90 < th dose independent rect. 6 7
941 89.86 radiation 1.0 270 > th dose dependent rect. 12 4
958 90.03 wind 9.0 10 < th dose independent rect. 6 7
996 90.22 humidity 50.0 270 > th dose independent rect. 1 15