BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0119700 Os08g0119700|Os08g0119700
(351 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68520.1 | chr1:25709331-25710749 REVERSE LENGTH=407 60 1e-09
AT4G25990.2 | chr4:13191937-13193543 REVERSE LENGTH=410 58 9e-09
AT5G14370.1 | chr5:4632147-4633651 REVERSE LENGTH=340 56 3e-08
AT5G57180.2 | chr5:23168393-23170763 FORWARD LENGTH=436 55 5e-08
AT1G07050.1 | chr1:2164327-2165133 REVERSE LENGTH=196 55 6e-08
AT1G25440.1 | chr1:8933939-8935284 REVERSE LENGTH=418 54 1e-07
AT1G73870.1 | chr1:27779214-27780522 FORWARD LENGTH=393 54 1e-07
AT1G49130.1 | chr1:18174741-18175936 REVERSE LENGTH=327 51 1e-06
>AT1G68520.1 | chr1:25709331-25710749 REVERSE LENGTH=407
Length = 406
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 184 RSLLLKLDYEEILAAWAGRGSLYIXXXXXXXXXXXXXXXXELELDSVFXXXXXXXXXXXX 243
++L+L+LDYE +++ W G+G + E++LD V
Sbjct: 287 KALMLRLDYESVISTWGGQGIPWTARVPS-----------EIDLDMVCFPTHTMGESGAE 335
Query: 244 XXXXXX----------XXXXXXXEKVRRYKEKRQGRLFAKRIRYEVRRLNAVKRPRLK 291
+V RY+EKR+ RLF+K+IRYEVR+LNA KRPR+K
Sbjct: 336 AHHHNHFRGLGLHLGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMK 393
>AT4G25990.2 | chr4:13191937-13193543 REVERSE LENGTH=410
Length = 409
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 20/118 (16%)
Query: 187 LLKLDYEEILAAWAGRGSLYIXXXXXXXXXXXXXXXXELELDSVFXXXXXXXXXXXXXXX 246
LLKLDY+ +L AW+G+ S + E+D +F
Sbjct: 292 LLKLDYDGVLEAWSGKESPFSDEILGSDADGVDFHVRLGEID-LFGESGMREA------- 343
Query: 247 XXXXXXXXXXEKVRRYKEKRQGRLFAKRIRYEVRRLNAVKRPRLKDEN-NSNSVQFSH 303
V RYKEKR+ RLF+K+IRY+VR+LNA +RPR+K ++ + N V SH
Sbjct: 344 -----------SVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMKVKDWHCNIVVVSH 390
>AT5G14370.1 | chr5:4632147-4633651 REVERSE LENGTH=340
Length = 339
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 29/31 (93%)
Query: 261 RYKEKRQGRLFAKRIRYEVRRLNAVKRPRLK 291
RYKEKRQ RLF+KRIRY+VR+LNA KRPR+K
Sbjct: 300 RYKEKRQNRLFSKRIRYQVRKLNAEKRPRVK 330
>AT5G57180.2 | chr5:23168393-23170763 FORWARD LENGTH=436
Length = 435
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 25/107 (23%)
Query: 187 LLKLDYEEILAAWAGRGSLYIXXXXXXXXXXXXXXXXELEL--DSVFXXXXXXXXXXXXX 244
LLKLDY+ +L AW+ + S + +++L DS
Sbjct: 336 LLKLDYDGVLEAWSDKTSPFPDEIQGSEAVDVNARLAQIDLFGDSGMREAS--------- 386
Query: 245 XXXXXXXXXXXXEKVRRYKEKRQGRLFAKRIRYEVRRLNAVKRPRLK 291
V RYKEKR+ RLF+K+IRY+VR+LNA +RPR+K
Sbjct: 387 --------------VLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMK 419
>AT1G07050.1 | chr1:2164327-2165133 REVERSE LENGTH=196
Length = 195
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 259 VRRYKEKRQGRLFAKRIRYEVRRLNAVKRPRLK 291
V RYKEKRQ RLF+K+IRY+VR+LNA KRPR K
Sbjct: 155 VLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFK 187
>AT1G25440.1 | chr1:8933939-8935284 REVERSE LENGTH=418
Length = 417
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 258 KVRRYKEKRQGRLFAKRIRYEVRRLNAVKRPRLK 291
+V RY+EKR+ RLF+K+IRYEVR+LNA KRPR+K
Sbjct: 364 RVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMK 397
>AT1G73870.1 | chr1:27779214-27780522 FORWARD LENGTH=393
Length = 392
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 185 SLLLKLDYEEILAAWAGRGSLYIXXXXXXXXXXXXXXXXELELDSVFXXXXXXXXXXXXX 244
SL L+LDY +++AW GS + + +
Sbjct: 276 SLFLRLDYGAVISAWDNHGSPWKTGIKPECMLGGNTCLPHV-VGGYEKLMSSDGSVTRQQ 334
Query: 245 XXXXXXXXXXXXEKVRRYKEKRQGRLFAKRIRYEVRRLNAVKRPRLK 291
+V RYKEKR+ RLF+K+IRYEVR+LNA +RPR+K
Sbjct: 335 GRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIK 381
>AT1G49130.1 | chr1:18174741-18175936 REVERSE LENGTH=327
Length = 326
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 30/34 (88%)
Query: 258 KVRRYKEKRQGRLFAKRIRYEVRRLNAVKRPRLK 291
+V RY++KR+ RLF K+IRYEVR++NA KRPR+K
Sbjct: 281 RVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMK 314
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,354,778
Number of extensions: 120823
Number of successful extensions: 339
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 8
Length of query: 351
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,364,969
Effective search space: 2099607219
Effective search space used: 2099607219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)