Os08g0113800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0113800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.46 | 0.244 | 8.38 | -0.912 | 0.75 | -104 | -0.631 | -216 | 0.305 | 2.91 | 15 | 90 | -- | -- |
| 27.47 | 0.246 | 8.91 | 0.207 | 0.75 | -1.74 | -0.628 | -- | 0.305 | 2.91 | 15 | 90 | -- | -- |
| 28.79 | 0.25 | 8.39 | -0.871 | 0.748 | -104 | -- | -216 | 0.311 | 2.93 | 15.02 | 80 | -- | -- |
| 28.75 | 0.25 | 8.91 | 0.221 | 0.745 | -1.62 | -- | -- | 0.309 | 2.94 | 14.98 | 63 | -- | -- |
| 60.7 | 0.363 | 8.45 | -0.672 | -- | -103 | -- | -214 | 0.337 | -- | 14.9 | 64 | -- | -- |
| 33.17 | 0.27 | 8.9 | 0.278 | 0.729 | -- | -0.442 | -- | 0.323 | 3.05 | -- | -- | -- | -- |
| 33.82 | 0.272 | 8.9 | 0.288 | 0.727 | -- | -- | -- | 0.326 | 3.03 | -- | -- | -- | -- |
| 60.33 | 0.362 | 8.9 | 0.249 | -- | -1.33 | -- | -- | 0.327 | -- | 15.11 | 257 | -- | -- |
| 29.97 | 0.255 | 8.91 | -- | 0.748 | -1.72 | -- | -- | 0.282 | 2.94 | 14.9 | 107 | -- | -- |
| 64.07 | 0.374 | 8.9 | 0.319 | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
| 36 | 0.281 | 8.91 | -- | 0.732 | -- | -- | -- | 0.294 | 3.04 | -- | -- | -- | -- |
| 56.03 | 0.349 | 8.93 | -- | -- | -0.908 | -- | -- | 0.204 | -- | 22.4 | 1088 | -- | -- |
| 66.74 | 0.381 | 8.91 | -- | -- | -- | -- | -- | 0.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.32 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 3 | 25.43 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 4 | 25.43 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 11 | 25.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 17 | 26.13 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 21 | 26.29 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 27 | 26.38 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 31 | 26.41 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 33 | 26.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 34 | 26.44 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 16 | 1 |
| 37 | 26.50 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 40 | 26.54 | temperature | 15.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 53 | 26.72 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 3 |
| 55 | 26.72 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 20 |
| 64 | 26.82 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 68 | 26.87 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 75 | 26.89 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 77 | 26.90 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 79 | 26.90 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 2 | 5 |
| 100 | 26.98 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 113 | 27.01 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 116 | 27.02 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 16 |
| 123 | 27.02 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 124 | 27.03 | temperature | 15.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 138 | 27.04 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 13 | 17 |
| 144 | 27.05 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 15 | 15 |
| 180 | 27.07 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 186 | 27.08 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 10 | 8 |
| 187 | 27.08 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 207 | 27.10 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 14 | 17 |
| 208 | 27.11 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 229 | 27.13 | temperature | 15.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 230 | 27.13 | temperature | 15.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 235 | 27.14 | temperature | 15.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 237 | 27.14 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 253 | 27.16 | radiation | 1.0 | 720 | < th | dose independent | rect. | 12 | 2 |
| 259 | 27.16 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 12 | 2 |
| 264 | 27.16 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 11 |
| 273 | 27.17 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 278 | 27.17 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 304 | 27.19 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 310 | 27.19 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 15 | 1 |
| 319 | 27.20 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 337 | 27.20 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 341 | 27.20 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 13 | 1 |
| 342 | 27.20 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 370 | 27.21 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 12 | 6 |
| 383 | 27.22 | temperature | 15.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 388 | 27.22 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 487 | 27.28 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 502 | 27.29 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 520 | 27.31 | temperature | 20.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 537 | 27.32 | temperature | 20.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 568 | 27.34 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 10 | 8 |
| 656 | 27.39 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 666 | 27.40 | humidity | 90.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 735 | 27.42 | temperature | 15.0 | 10 | > th | dose independent | sin | 7 | NA |
| 755 | 27.42 | temperature | 15.0 | 10 | > th | dose independent | sin | 17 | NA |
| 769 | 27.42 | temperature | 15.0 | 10 | > th | dose independent | sin | 1 | NA |
| 784 | 27.42 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 792 | 27.42 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 819 | 27.44 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 830 | 27.44 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 847 | 27.46 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 849 | 27.46 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |
| 898 | 27.46 | temperature | 15.0 | 90 | < th | dose independent | no | NA | NA |
| 900 | 27.46 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 902 | 27.46 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 905 | 27.46 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 1 |