BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0113800 Os08g0113800|J065071I11
         (250 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G23093.1  | chr2:9832193-9834416 FORWARD LENGTH=450             52   3e-07

>AT2G23093.1 | chr2:9832193-9834416 FORWARD LENGTH=450
          Length = 449

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 55/132 (41%), Gaps = 17/132 (12%)

Query: 73  ASVAEGIHSVFGEDEFARCGLGREQMXXXXXXXXXXXXXXXXXXXXXSDKLNVDA-CRFY 131
           +SV EG+ SV+GE E    GL +E M                     SD +     C  Y
Sbjct: 65  SSVMEGLLSVYGELELTTYGLSKESMVFYLCVGYSTALVLGPVLGVVSDLIGQKKICLLY 124

Query: 132 SISFTLSFLVIFEILCDLDALGALKSFSGLRCAWISNLISALASSMFYFCFETWFVVEHE 191
            +   L  +V           G  K  +    AW +N+  +LA  ++ F FETW VVEHE
Sbjct: 125 CV---LHLIV-----------GVWKRITMSPSAWFANVFLSLAGLVYSFGFETWLVVEHE 170

Query: 192 KVSPFQNEDSLT 203
           K S  Q  DSL 
Sbjct: 171 KQS--QRNDSLN 180




 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 27/40 (67%)

Query: 199 EDSLTIAYVTVGIALSIVAYDYQDIGTLVILFCIFHACVG 238
           ED L   Y  +GI  SIVAYDYQ+I  LV+LFC+FH   G
Sbjct: 326 EDCLVYIYALLGIVFSIVAYDYQEIRILVVLFCLFHGFAG 365



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.142    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,431,106
Number of extensions: 103479
Number of successful extensions: 278
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 2
Length of query: 250
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 154
Effective length of database: 8,474,633
Effective search space: 1305093482
Effective search space used: 1305093482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)