Os08g0112700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TAGL12 transcription factor.
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Os08g0112700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TAGL12 transcription factor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.39 | 0.408 | 12.4 | 0.526 | 0.904 | -1.3 | -0.509 | 1.42 | -1.14 | 23.2 | 91.36 | 485 | -- | -- |
| 78.24 | 0.412 | 12.4 | 0.594 | 0.896 | -1.24 | -0.778 | -- | -1.12 | 23.1 | 91 | 515 | -- | -- |
| 76.37 | 0.407 | 12.4 | 0.527 | 0.906 | -1.31 | -- | 1.69 | -1.14 | 23.2 | 91.36 | 485 | -- | -- |
| 80.83 | 0.419 | 12.4 | 0.651 | 0.883 | -1.27 | -- | -- | -1.11 | 23.4 | 90.88 | 496 | -- | -- |
| 108.13 | 0.484 | 12.4 | 0.641 | -- | -1.63 | -- | 0.821 | -1.15 | -- | 84.52 | 775 | -- | -- |
| 100.11 | 0.469 | 12.4 | 0.516 | 1.14 | -- | -0.853 | -- | -0.924 | 22 | -- | -- | -- | -- |
| 102.94 | 0.475 | 12.4 | 0.549 | 1.14 | -- | -- | -- | -0.923 | 22.1 | -- | -- | -- | -- |
| 109.57 | 0.488 | 12.4 | 0.727 | -- | -1.65 | -- | -- | -1.16 | -- | 84.3 | 771 | -- | -- |
| 91.93 | 0.447 | 12.4 | -- | 0.914 | -1.17 | -- | -- | -1.15 | 23.3 | 91.24 | 496 | -- | -- |
| 181.66 | 0.63 | 12.3 | 0.564 | -- | -- | -- | -- | -0.922 | -- | -- | -- | -- | -- |
| 110.88 | 0.493 | 12.4 | -- | 1.14 | -- | -- | -- | -0.984 | 22.1 | -- | -- | -- | -- |
| 118.83 | 0.508 | 12.4 | -- | -- | -1.64 | -- | -- | -1.13 | -- | 70.55 | 854 | -- | -- |
| 190.04 | 0.643 | 12.3 | -- | -- | -- | -- | -- | -0.984 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.28 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 2 | 68.37 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 4 | 68.41 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 20 | 70.00 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 32 | 70.66 | humidity | 90 | 720 | > th | dose dependent | sin | 17 | NA |
| 125 | 77.01 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 5 |
| 127 | 77.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 11 |
| 131 | 77.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 136 | 77.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 167 | 77.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 171 | 77.43 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 227 | 77.92 | humidity | 90 | 720 | > th | dose independent | rect. | 7 | 19 |
| 303 | 78.85 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 309 | 78.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 313 | 78.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 317 | 78.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 319 | 78.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 322 | 78.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 323 | 78.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 326 | 78.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 327 | 78.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 330 | 78.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 337 | 79.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 392 | 79.09 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 395 | 79.10 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 416 | 79.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 417 | 79.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 494 | 79.44 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 5 |
| 521 | 79.57 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 538 | 79.67 | humidity | 90 | 720 | > th | dose dependent | no | NA | NA |
| 552 | 79.70 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 561 | 79.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 14 |
| 562 | 79.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 564 | 79.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 567 | 79.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 579 | 79.80 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 633 | 80.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 634 | 80.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 20 |
| 646 | 80.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 18 |
| 654 | 80.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 657 | 80.20 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 683 | 80.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 722 | 80.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 9 |
| 782 | 80.54 | humidity | 90 | 720 | > th | dose independent | sin | 16 | NA |
| 792 | 80.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 801 | 80.68 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 825 | 80.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 842 | 80.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 907 | 81.18 | humidity | 90 | 90 | > th | dose dependent | rect. | 20 | 16 |
| 931 | 81.26 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 7 |
| 949 | 81.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 21 |
| 956 | 81.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 958 | 81.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 971 | 81.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 995 | 81.39 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |