Os08g0110300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Longin domain containing protein.
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Os08g0110300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Longin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.7 | 0.285 | 10.7 | 0.354 | 1.14 | -0.707 | 0.351 | 1.34 | 0.16 | 3.93 | 25.25 | 1591 | -- | -- |
| 37.57 | 0.285 | 10.7 | 0.0855 | 1.14 | -0.552 | 0.371 | -- | 0.198 | 3.94 | 23.2 | 7490 | -- | -- |
| 37.06 | 0.284 | 10.7 | 0.349 | 1.13 | -0.705 | -- | 1.34 | 0.16 | 3.95 | 25.21 | 1597 | -- | -- |
| 37.86 | 0.287 | 10.7 | 0.0515 | 1.16 | -0.548 | -- | -- | 0.185 | 4.01 | 23.4 | 7492 | -- | -- |
| 56.39 | 0.35 | 10.7 | 0.433 | -- | -1.71 | -- | 2.27 | 0.291 | -- | 23.97 | 152 | -- | -- |
| 49.39 | 0.329 | 10.7 | -0.187 | 1.15 | -- | 0.27 | -- | 0.00977 | 4.03 | -- | -- | -- | -- |
| 49.6 | 0.33 | 10.7 | -0.19 | 1.15 | -- | -- | -- | 0.00825 | 4.05 | -- | -- | -- | -- |
| 58.29 | 0.356 | 10.7 | 0.109 | -- | -1.54 | -- | -- | 0.207 | -- | 23.9 | 146 | -- | -- |
| 37.9 | 0.287 | 10.7 | -- | 1.16 | -0.534 | -- | -- | 0.165 | 4.01 | 24.45 | 7482 | -- | -- |
| 121.64 | 0.515 | 10.7 | -0.143 | -- | -- | -- | -- | 0.0389 | -- | -- | -- | -- | -- |
| 50.55 | 0.333 | 10.7 | -- | 1.15 | -- | -- | -- | 0.0294 | 4.05 | -- | -- | -- | -- |
| 58.58 | 0.356 | 10.7 | -- | -- | -1.52 | -- | -- | 0.189 | -- | 23.98 | 147 | -- | -- |
| 122.18 | 0.516 | 10.7 | -- | -- | -- | -- | -- | 0.0548 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.93 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 2 | 33.93 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 3 | 34.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 4 | 34.16 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 5 | 34.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 7 | 34.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 8 | 34.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 9 | 34.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 10 | 34.45 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 15 | 34.63 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 16 | 34.69 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 17 | 34.71 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 18 | 34.71 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 19 | 34.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 19 |
| 20 | 34.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 17 |
| 35 | 34.90 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 43 | 34.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 54 | 35.00 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 55 | 35.00 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 61 | 35.03 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 68 | 35.05 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 17 | NA |
| 76 | 35.07 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 97 | 35.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 10 |
| 123 | 35.21 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 126 | 35.21 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 10 |
| 136 | 35.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 137 | 35.24 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 149 | 35.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 155 | 35.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 168 | 35.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 169 | 35.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 8 |
| 170 | 35.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 10 |
| 189 | 35.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 236 | 35.35 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 257 | 35.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 17 |
| 280 | 35.44 | humidity | 60.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 329 | 35.50 | humidity | 60.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 331 | 35.50 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 341 | 35.51 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 345 | 35.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 16 |
| 346 | 35.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 18 |
| 362 | 35.53 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 18 | NA |
| 365 | 35.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 16 |
| 368 | 35.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 16 |
| 371 | 35.54 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 18 | NA |
| 378 | 35.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 383 | 35.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 388 | 35.54 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 389 | 35.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 393 | 35.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 18 |
| 395 | 35.54 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 18 | NA |
| 398 | 35.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 8 |
| 399 | 35.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 402 | 35.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 403 | 35.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 18 |
| 404 | 35.55 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 408 | 35.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 13 |
| 466 | 35.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 498 | 35.61 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 533 | 35.64 | temperature | 20.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 600 | 35.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 605 | 35.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 638 | 35.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 640 | 35.75 | temperature | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 661 | 35.77 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 22 |
| 698 | 35.81 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 725 | 35.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 10 |
| 771 | 35.92 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 772 | 35.92 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 12 |
| 781 | 35.95 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 797 | 35.98 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 798 | 35.98 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 822 | 36.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 887 | 36.11 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 951 | 36.16 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 16 |
| 970 | 36.20 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 991 | 36.21 | temperature | 20.0 | 90 | > th | dose dependent | sin | 23 | NA |
| 999 | 36.22 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 19 |