BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0110300 Os08g0110300|AK067360
(277 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10170.1 | chr4:6344587-6345351 FORWARD LENGTH=255 124 4e-29
AT1G33475.1 | chr1:12147423-12148190 REVERSE LENGTH=256 104 4e-23
AT4G27840.1 | chr4:13865268-13866050 REVERSE LENGTH=261 60 9e-10
AT5G52990.1 | chr5:21484188-21485006 FORWARD LENGTH=273 53 2e-07
AT2G32670.1 | chr2:13857941-13859346 FORWARD LENGTH=286 52 4e-07
AT3G54300.1 | chr3:20108355-20110127 REVERSE LENGTH=241 50 2e-06
AT1G04750.1 | chr1:1331857-1333426 REVERSE LENGTH=220 49 3e-06
AT1G04760.1 | chr1:1334760-1336070 FORWARD LENGTH=221 49 4e-06
>AT4G10170.1 | chr4:6344587-6345351 FORWARD LENGTH=255
Length = 254
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 117/259 (45%), Gaps = 27/259 (10%)
Query: 36 NTV-YCCIAKGRKIIYCYNSKDGDPHMETTAALCLENAPSYHRHYIHTAGSRSYGYLMAD 94
NTV YCC+++ +I+Y YN GD E+ AALCLE +P +H Y T G R +G+L+ D
Sbjct: 6 NTVHYCCVSRDNQILYSYNG--GDQTNESLAALCLEKSPPFHTWYFETIGKRRFGFLIGD 63
Query: 95 GHTFFAIIDPSVGNVGALQFLERVREVFRTVNRS-------------GFHDSLVPAVQRL 141
G +FAI+D + L+FLE +R+ F+ R D LVP V RL
Sbjct: 64 GFVYFAIVDEVLKRSSVLKFLEHLRDEFKKAARENSRGSFTAMIGSINVEDQLVPVVTRL 123
Query: 142 VASLEKMPHATFDLE-ESVEKGEPSDSSSCTSSKVPLLGRSGSRXXXXXXXXXXXXXXVC 200
+ASLE++ ++ + E +S GE S+ S+ S+K PLLGR + V
Sbjct: 124 IASLERVAESSSNNELKSSNLGEQSEGSN--STKAPLLGRLSKQ------EKKKGKDHVI 175
Query: 201 EDEQHGTRGVRIDVPPEEVGGMXXXXXX--XXXXXXXXXXXXXXWVRHXXXXXXXXXXXX 258
E E+H R ++ + G W R
Sbjct: 176 ELEEHRKSNDRGNITDDSAGAGTSLEKECVSSSGRSVTQSFEWKWRRLVQIVLAIDAAIC 235
Query: 259 XLLFAAWLAVCKGFQCVSS 277
LF WLA+C+G +C S
Sbjct: 236 LTLFGIWLAICRGIECTRS 254
>AT1G33475.1 | chr1:12147423-12148190 REVERSE LENGTH=256
Length = 255
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 109/268 (40%), Gaps = 38/268 (14%)
Query: 33 SADNTV-YCCIAKGRKIIYCYNSKDGDPHMETTAALCLENAPSYHRHYIHTAGSRSYGYL 91
S NTV YCC+++ +I+Y YN+ + E+ AALCLE P +H+ Y T G +++G+L
Sbjct: 3 SIQNTVHYCCVSRDNQIMYAYNNAGDHRNNESLAALCLEKTPPFHKWYFETRGKKTFGFL 62
Query: 92 MADGHTFFAIIDPSVGNVGALQFLERVREVFRTVNRSGFHDSLV----------PAVQRL 141
M D +FAI+D L FLE++R+ + N+ S V+RL
Sbjct: 63 MKDDFVYFAIVDDVFKKSSVLDFLEKLRDELKEANKKNSRGSFSGSISFSNVQDQIVRRL 122
Query: 142 VASLEKMPHATFDLEE-SVEKGEPSDSSSCTSSKVPLLGRSGSRXXXXXXXXXXXXXXVC 200
+ASLE H L S++ E S +S +SK PLLGRS +
Sbjct: 123 IASLE-FDHTCLPLSSPSIDGAEQSYAS---NSKAPLLGRSNKQDKKKG----------- 167
Query: 201 EDEQHGTRGVRIDV--PPEEVGGMXXXXXXXXXXXXX---------XXXXXXXWVRHXXX 249
D H RG+ I+ + G + W R
Sbjct: 168 RDHAHSLRGIEIEEHRKSNDRGNVTECSNASSESATYVPRRGRSGGSQSIERKWRRQVKI 227
Query: 250 XXXXXXXXXXLLFAAWLAVCKGFQCVSS 277
L WLA+C G +C S
Sbjct: 228 VLAIDIAICLTLLGVWLAICHGIECTRS 255
>AT4G27840.1 | chr4:13865268-13866050 REVERSE LENGTH=261
Length = 260
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 102/269 (37%), Gaps = 34/269 (12%)
Query: 30 MSSSADNTVYCCIAKGRKIIYCYNSKDGDPHMETTAALCLENAPSYHRHYIHTAGSRSYG 89
M+S+ Y CIAKG I+ + SK+ +P +E A C+EN P +H HT R+Y
Sbjct: 1 MTSNQRMLFYSCIAKGTVILAEFASKE-EPGIEDLALRCIENVPPHHSMISHTVHKRTYA 59
Query: 90 YLMADGHTFFAIIDPSVGNVGALQFLERVREVFRTVNRSG-FHDSLVPAVQRL------- 141
++ ++FAI+D V ++ R++ ++ G DSL Q
Sbjct: 60 LIIDGLFSYFAILDEVVAKSESVWLFNRLKSATESLMEDGSTADSLDNPTQHCLQSKLDP 119
Query: 142 ----VASLEKMPHATFDLE----ESVEKGEPSDSSSCTSSK-------VPLLGRSGSRXX 186
+A++ + +LE S+ + S++ S SSK +PLLG+
Sbjct: 120 VFAEIAAIGGNHNKDLELEFGSPRSIAREIKSNNQSLDSSKGRKGGALMPLLGKP----- 174
Query: 187 XXXXXXXXXXXXVCEDEQHGTRGVRIDVPPEEVGGMXXXXXXXXXXXXXXXXXXXXWVRH 246
+ E H ++D+ W +H
Sbjct: 175 LRVLKNKKRLQTEAKSEGHWNEK-KMDLGGGGK----GVRNGLIHDHHHRQKAKQIWRKH 229
Query: 247 XXXXXXXXXXXXXLLFAAWLAVCKGFQCV 275
+LF WL +C+GFQC+
Sbjct: 230 VWIVLMFDLCICLVLFGIWLWICQGFQCI 258
>AT5G52990.1 | chr5:21484188-21485006 FORWARD LENGTH=273
Length = 272
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 30 MSSSADNTVYCCIAKGRKIIYCYNSKDGDPHMETTAALCLENAPSYHRHYIHTAGSRSYG 89
M S+ Y CIAKG ++ + S+ +P +E A C+EN P +H + HT ++Y
Sbjct: 1 MISNPSLLSYTCIAKGTVVLAEFVSRQ-EPGIEAIALRCIENTPPHHSMFSHTVHKKTYT 59
Query: 90 YLM-ADGHTFFAIIDPSVGNVGALQFLERVREVFRTVNRSGFHD 132
+ + D +F+I D S+ + L R+R + + G D
Sbjct: 60 FAIDDDSFVYFSISDESMEKPESFWVLNRLRSAIEDLIKDGGSD 103
>AT2G32670.1 | chr2:13857941-13859346 FORWARD LENGTH=286
Length = 285
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 35 DNTVYCCIAKGRKIIYCYNSKDGDPHMETTAALCLENAPSYHRHYIHTAGSRSYGYLMAD 94
N +Y +A+G I+ Y G+ AA CL+ PS + + + ++ YL+ +
Sbjct: 69 QNLIYSFVARGTVILVEYTEFKGN--FTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVEN 126
Query: 95 GHTFFAIIDPSVGNVGALQFLERVREVF 122
G T+ + SVG + FLERV+E F
Sbjct: 127 GFTYCVVAVESVGRQIPMAFLERVKEDF 154
>AT3G54300.1 | chr3:20108355-20110127 REVERSE LENGTH=241
Length = 240
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 33 SADNTVYCCIAKGRKIIYCYNSKDGDPHMETTAALCLENAPSYHRHYIHTAGSRSYGYLM 92
S +Y +AKG ++ + G+ T A CL+ P+ Y ++ ++ +L+
Sbjct: 2 SQKGLIYSFVAKGTVVLAEHTPYSGN--FSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLV 59
Query: 93 ADGHTFFAIIDPSVGNVGALQFLERVREVFR 123
+G F + D S G FLERV+E F+
Sbjct: 60 DNGFVFLVVADESTGRSVPFVFLERVKEDFK 90
>AT1G04750.1 | chr1:1331857-1333426 REVERSE LENGTH=220
Length = 219
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 38 VYCCIAKGRKIIYCYNSKDGDPHMETTAALCLENAPSYHRHYIHTAGSRSYGYLMADGHT 97
+Y +A+G I+ + G+ + AA CL+ PS + + + ++ YL+ DG T
Sbjct: 7 IYSFVARGTVILVEFTDFKGN--FTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFT 64
Query: 98 FFAIIDPSVGNVGALQFLERVREVF 122
+ + S G + FLERV+E F
Sbjct: 65 YCVVAVDSAGRQIPMSFLERVKEDF 89
>AT1G04760.1 | chr1:1334760-1336070 FORWARD LENGTH=221
Length = 220
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 38 VYCCIAKGRKIIYCYNSKDGDPHMETTAALCLENAPSYHRHYIHTAGSRSYGYLMADGHT 97
+Y +A+G I+ Y G+ + AA CL+ PS + + + ++ YL +G T
Sbjct: 7 IYSFVARGTVILAEYTEFKGN--FTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFT 64
Query: 98 FFAIIDPSVGNVGALQFLERVREVF 122
+ ++ S G + FLERV+E F
Sbjct: 65 YCVVVIESAGRQIPMAFLERVKEDF 89
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,125,834
Number of extensions: 184280
Number of successful extensions: 490
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 8
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)