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Os08g0104100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0124) R2 : 0.617
β1 : 1.09 (0.0456) R2dD : 0.502 R2D : 0.295
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.45 (0.0266) R2dN8 : 0.322 R2N8 : 0.115
σ : 0.234
deviance : 24.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.69 0.203 11.6 1.06 0.281 -0.284 -0.094 0.0521 0.408 6.18 1015 4187 -- --
18.69 0.201 11.6 1.06 0.279 -0.291 -0.0961 -- 0.41 6.17 1015 4227 -- --
18.71 0.201 11.6 1.05 0.281 -0.285 -- 0.0614 0.408 6.11 1015 4187 -- --
18.71 0.201 11.6 1.06 0.281 -0.293 -- -- 0.409 6.09 1015 4269 -- --
22.75 0.222 11.6 1.06 -- -0.329 -- 0.0284 0.411 -- 1015 4184 -- --
20.5 0.212 11.6 1.09 0.294 -- -0.108 -- 0.443 6.13 -- -- -- --
20.53 0.212 11.6 1.09 0.293 -- -- -- 0.443 6.06 -- -- -- --
22.75 0.222 11.6 1.06 -- -0.337 -- -- 0.412 -- 1015 4171 -- --
25.07 0.233 11.7 -- 0.293 -0.814 -- -- 0.127 6.11 1016 47520 -- --
24.99 0.234 11.6 1.09 -- -- -- -- 0.45 -- -- -- -- --
51.59 0.336 11.7 -- 0.31 -- -- -- 0.322 5.88 -- -- -- --
29.54 0.253 11.7 -- -- -0.821 -- -- 0.131 -- 1016 47520 -- --
56.57 0.351 11.7 -- -- -- -- -- 0.328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.54 temperature 30.0 90 < th dose dependent rect. 13 16
2 17.55 temperature 30.0 90 < th dose dependent rect. 15 14
4 17.65 temperature 30.0 10 < th dose dependent rect. 14 16
28 18.01 temperature 25.0 90 < th dose independent rect. 13 16
33 18.07 temperature 25.0 90 < th dose independent rect. 15 14
59 18.16 temperature 30.0 10 < th dose dependent rect. 12 21
142 18.37 temperature 30.0 10 < th dose dependent sin 13 NA
143 18.37 temperature 25.0 10 < th dose dependent sin 15 NA
144 18.37 temperature 15.0 270 > th dose dependent rect. 17 8
153 18.38 humidity 60.0 43200 < th dose dependent rect. 4 13
161 18.38 humidity 60.0 43200 < th dose dependent rect. 19 22
172 18.40 wind 1.0 14400 < th dose dependent rect. 8 1
173 18.40 humidity 60.0 43200 < th dose dependent rect. 14 1
197 18.41 humidity 60.0 43200 < th dose dependent rect. 11 23
198 18.41 humidity 60.0 43200 < th dose dependent rect. 13 23
200 18.42 humidity 60.0 43200 < th dose dependent sin 1 NA
201 18.42 humidity 60.0 43200 < th dose dependent no NA NA
202 18.42 humidity 70.0 43200 < th dose dependent rect. 4 6
286 18.43 humidity 60.0 43200 < th dose dependent rect. 16 23
320 18.45 temperature 10.0 10 > th dose dependent sin 12 NA
324 18.45 humidity 60.0 43200 < th dose dependent rect. 11 5
351 18.46 humidity 70.0 43200 < th dose dependent rect. 8 2
397 18.47 humidity 70.0 43200 < th dose dependent rect. 18 16
413 18.48 humidity 90.0 14400 < th dose dependent rect. 2 3
426 18.49 humidity 60.0 43200 < th dose dependent rect. 11 9
430 18.49 humidity 60.0 43200 < th dose dependent rect. 11 15
470 18.51 temperature 15.0 720 > th dose independent rect. 13 8
490 18.52 humidity 60.0 43200 < th dose dependent sin 10 NA
497 18.53 temperature 15.0 30 > th dose independent rect. 9 23
517 18.54 temperature 15.0 1440 > th dose independent rect. 21 1
518 18.54 radiation 1.0 720 < th dose independent rect. 11 3
529 18.54 radiation 1.0 720 < th dose dependent rect. 11 3
602 18.59 humidity 50.0 43200 > th dose independent rect. 14 2
603 18.59 humidity 60.0 43200 > th dose independent rect. 16 18
604 18.59 humidity 60.0 43200 < th dose independent rect. 16 18
620 18.60 humidity 60.0 43200 < th dose independent sin 10 NA
621 18.60 wind 1.0 14400 > th dose independent rect. 8 1
642 18.61 humidity 50.0 43200 > th dose independent rect. 14 20
647 18.61 humidity 80.0 720 > th dose dependent rect. 12 1
654 18.62 humidity 90.0 720 > th dose independent rect. 12 1
656 18.62 humidity 60.0 43200 > th dose independent rect. 4 6
660 18.62 humidity 50.0 43200 > th dose independent rect. 14 18
670 18.62 temperature 15.0 30 > th dose dependent rect. 20 12
672 18.63 wind 1.0 14400 < th dose independent rect. 8 1
687 18.64 humidity 60.0 43200 > th dose independent rect. 9 1
689 18.64 humidity 70.0 43200 > th dose independent rect. 19 14
695 18.64 temperature 25.0 30 > th dose independent rect. 9 23
731 18.66 atmosphere 1015.0 4320 < th dose independent rect. 18 15
732 18.66 atmosphere 1015.0 4320 > th dose independent rect. 17 16
753 18.66 atmosphere 1015.0 4320 > th dose dependent rect. 22 11
760 18.67 temperature 25.0 90 < th dose independent sin 15 NA
761 18.67 radiation 20.0 43200 < th dose independent rect. 9 2
763 18.67 atmosphere 1015.0 4320 < th dose independent rect. 22 10
767 18.67 atmosphere 1015.0 4320 > th dose independent rect. 19 13
768 18.67 atmosphere 1015.0 4320 < th dose independent rect. 19 13
800 18.67 precipitation 0.1 14400 > th dose dependent rect. 3 5
801 18.67 temperature 30.0 720 < th dose dependent rect. 11 7
812 18.68 humidity 60.0 43200 > th dose independent sin 10 NA
813 18.68 atmosphere 1015.0 4320 > th dose independent sin 9 NA
816 18.68 atmosphere 1015.0 4320 < th dose independent sin 9 NA
820 18.68 radiation 30.0 43200 > th dose independent rect. 11 2
822 18.68 humidity 60.0 43200 < th dose independent rect. 5 5
824 18.68 precipitation 0.1 14400 > th dose independent rect. 3 5
825 18.68 humidity 50.0 43200 > th dose independent rect. 14 6
830 18.68 atmosphere 1015.0 4320 > th dose independent rect. 22 10
841 18.68 humidity 60.0 43200 < th dose independent rect. 23 13
844 18.68 humidity 70.0 43200 < th dose independent rect. 19 14
877 18.68 radiation 40.0 43200 < th dose dependent rect. 10 1
910 18.68 temperature 10.0 10 > th dose dependent rect. 9 23
915 18.69 humidity 60.0 43200 < th dose independent rect. 9 1
919 18.69 precipitation 0.1 14400 < th dose independent rect. 4 4
932 18.69 humidity 60.0 43200 < th dose independent rect. 3 9
968 18.69 atmosphere 1015.0 4320 > th dose independent rect. 21 18
972 18.69 atmosphere 1015.0 4320 < th dose independent rect. 21 18