Os07g0691200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to D-alanine--D-alanine ligase B (EC 6.3.2.4) (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B).
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Os07g0691200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to D-alanine--D-alanine ligase B (EC 6.3.2.4) (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.82 | 0.639 | 11.9 | -0.668 | 0.816 | -4.97 | 1.12 | 37.1 | -1.19 | 4.77 | 29.33 | 249 | -- | -- |
| 214.06 | 0.681 | 12.2 | -2.68 | 1.02 | -0.928 | -0.102 | -- | -1.17 | 4.45 | 27.88 | 168 | -- | -- |
| 186.86 | 0.637 | 11.9 | -0.609 | 0.808 | -5.06 | -- | 37.1 | -1.21 | 4.19 | 29.36 | 276 | -- | -- |
| 205.42 | 0.668 | 12.2 | -2.89 | 0.78 | -0.969 | -- | -- | -1.25 | 4.04 | 27.48 | 357 | -- | -- |
| 211.04 | 0.677 | 11.9 | -0.419 | -- | -5.15 | -- | 33.8 | -1.08 | -- | 28.89 | 326 | -- | -- |
| 219.53 | 0.695 | 12.1 | -3 | 1.11 | -- | 0.936 | -- | -1.24 | 4.76 | -- | -- | -- | -- |
| 221.51 | 0.697 | 12.1 | -3 | 1.11 | -- | -- | -- | -1.25 | 4.52 | -- | -- | -- | -- |
| 223.93 | 0.697 | 12.1 | -2.75 | -- | -1.54 | -- | -- | -1.16 | -- | 25.7 | 267 | -- | -- |
| 413.69 | 0.947 | 12.1 | -- | 0.376 | -1.63 | -- | -- | -0.859 | 3.03 | 25.7 | 313 | -- | -- |
| 287.43 | 0.792 | 12.2 | -2.96 | -- | -- | -- | -- | -1.22 | -- | -- | -- | -- | -- |
| 459.48 | 1 | 12.1 | -- | 1.05 | -- | -- | -- | -0.911 | 4.59 | -- | -- | -- | -- |
| 417.62 | 0.952 | 12 | -- | -- | -1.87 | -- | -- | -0.757 | -- | 24.5 | 259 | -- | -- |
| 518.81 | 1.06 | 12.1 | -- | -- | -- | -- | -- | -0.887 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.29 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 17 |
| 16 | 182.54 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 12 | 9 |
| 28 | 183.57 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 14 | 18 |
| 30 | 183.82 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 31 | 183.84 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 21 |
| 53 | 185.11 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 54 | 185.17 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 15 |
| 55 | 185.22 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 17 |
| 69 | 185.74 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 23 |
| 72 | 185.94 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 93 | 186.96 | temperature | 30 | 720 | > th | dose independent | rect. | 10 | 1 |
| 103 | 187.38 | humidity | 60 | 270 | > th | dose independent | rect. | 17 | 10 |
| 106 | 187.42 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |
| 107 | 187.42 | atmosphere | 1000 | 30 | > th | dose independent | sin | 17 | NA |
| 108 | 187.44 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 111 | 187.45 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 134 | 187.85 | temperature | 30 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 136 | 187.88 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 154 | 188.20 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 155 | 188.22 | humidity | 70 | 30 | > th | dose independent | rect. | 18 | 11 |
| 159 | 188.27 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 160 | 188.29 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 171 | 188.42 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 22 | 21 |
| 179 | 188.55 | temperature | 30 | 270 | < th | dose independent | sin | 10 | NA |
| 181 | 188.57 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 182 | 188.59 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 184 | 188.63 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 192 | 188.74 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 22 | 23 |
| 196 | 188.84 | temperature | 30 | 270 | > th | dose dependent | sin | 10 | NA |
| 200 | 188.88 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 206 | 188.95 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 213 | 189.02 | temperature | 30 | 270 | > th | dose dependent | no | NA | NA |
| 355 | 189.23 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 363 | 189.31 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 9 | 15 |
| 368 | 189.34 | temperature | 30 | 270 | > th | dose dependent | sin | 19 | NA |
| 388 | 189.44 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 7 | 17 |
| 392 | 189.51 | radiation | 30 | 10 | < th | dose independent | rect. | 5 | 14 |
| 426 | 189.56 | atmosphere | 1000 | 720 | > th | dose independent | sin | 21 | NA |
| 436 | 189.70 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 23 |
| 439 | 189.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 454 | 189.86 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 17 |
| 527 | 190.33 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 23 |
| 529 | 190.35 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 10 |
| 536 | 190.40 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 541 | 190.44 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 10 |
| 550 | 190.49 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 576 | 190.65 | wind | 9 | 14400 | > th | dose dependent | rect. | 3 | 12 |
| 578 | 190.67 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 585 | 190.73 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 592 | 190.79 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 597 | 190.80 | radiation | 10 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 666 | 191.10 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 20 |
| 683 | 191.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 693 | 191.17 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 23 |
| 713 | 191.20 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 759 | 191.47 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 764 | 191.49 | temperature | 30 | 270 | > th | dose independent | sin | 11 | NA |
| 765 | 191.49 | radiation | 40 | 10 | < th | dose dependent | sin | 1 | NA |
| 766 | 191.49 | temperature | 30 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 767 | 191.49 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 769 | 191.50 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 1 | 20 |
| 774 | 191.52 | humidity | 80 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 794 | 191.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 840 | 191.71 | radiation | 1 | 270 | < th | dose independent | rect. | 14 | 12 |
| 841 | 191.71 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 19 |
| 843 | 191.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 865 | 191.80 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 890 | 191.85 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 920 | 191.97 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 935 | 192.01 | temperature | 30 | 270 | > th | dose independent | sin | 17 | NA |
| 954 | 192.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 968 | 192.10 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 969 | 192.10 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 11 |