BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0691200 Os07g0691200|AK101012
         (946 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08840.2  | chr3:2679648-2686157 REVERSE LENGTH=938           1119   0.0  

>AT3G08840.2 | chr3:2679648-2686157 REVERSE LENGTH=938
          Length = 937

 Score = 1119 bits (2895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/880 (62%), Positives = 675/880 (76%), Gaps = 16/880 (1%)

Query: 66  GESEGRPLRVGLVCGGPSPERGISLNSARSVLDHIQGEDLLVTCYYIDCGMNAYAISPAQ 125
           G+   + LRVGL+CGGPS ERGISLNSARSVLDHIQG+ + V+CYYID  + A+AIS AQ
Sbjct: 71  GQEMSKSLRVGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQ 130

Query: 126 LYSNTPSDFDFKLESLAQGFQSLFDFAQHLAANVDIVFPVIHGKFGEDGGIQELLEKANV 185
           +YSNTPSDFDFKLESLAQGF SL + A+HL + VDIVFPVIHG+FGEDGGIQELLE  N+
Sbjct: 131 VYSNTPSDFDFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNI 190

Query: 186 PFVGTPSKNCLLAFDKYNASLELNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENG 245
           PFVGT S+ C  AFDKY ASLEL   GF+TVPN+LV+   + KS++  WF    LD E G
Sbjct: 191 PFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMG 250

Query: 246 KVVVKPTSAGSSIGVVVAYGANDAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVG 305
           KVVVKP  AGSSIGV VA+G ND+ +KA  +I EGIDD+V++EVF+E   EFTAIV+DVG
Sbjct: 251 KVVVKPAKAGSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVG 310

Query: 306 TANNSEPVVLLPTEVELQSSSNIDIQEDTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIR 365
           + +   PVVL+PTEV+LQ     D +E+ IF+YRRKYLPT+QV YHTPPRFP  VI  IR
Sbjct: 311 SGSVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIR 370

Query: 366 QGVSILFRCLGLRDFARIDGWFL-PTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGME 424
           +  S++F+ LGLRDFARIDGW+L P    S P +E     G TK G ++FTDINL++GME
Sbjct: 371 EEASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSET---LGGTKSGDIIFTDINLISGME 427

Query: 425 QTSFLFQQSSKVGFSHSRILRTVVQHACSRYPSLVPCSNAWTALSRXXXXXXXXXXXXXG 484
           QTSFLFQQ+SKVGFSHS ILRT+V  ACSR+P L   +  ++ L +              
Sbjct: 428 QTSFLFQQASKVGFSHSNILRTIVHRACSRFPHLDWYNYGYSQLLQGSTTLEVSE----- 482

Query: 485 TSKKKVFVIFGGDTSERQVSLMSGTNVWLNLQGFDDLDVTPCLLTSGNGYSSFHNQNMNG 544
              +KVFVIFGGDTSERQVS+MSGTNVW+NLQ + DL+VTPCLL+     S   + N++ 
Sbjct: 483 -DPQKVFVIFGGDTSERQVSVMSGTNVWVNLQRYVDLNVTPCLLSPSLSNSLGASSNLD- 540

Query: 545 ISRDVWTLPYSLVLRHTIEEVNAACIEAIDPERMELTSRLRDQVMNELGQSLSKYDWFAG 604
            +R+VW LPYS+VLRHT EEV AAC+EA++P R   TS L+ QVM +L        WFAG
Sbjct: 541 -NREVWVLPYSVVLRHTAEEVLAACLEAVEPVRALFTSLLQKQVMEDLMDGFKNQSWFAG 599

Query: 605 FDIADKQPIKYSLQQWINHVKEAQAVVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQIAS 664
           FDI D+ P KYSL++WI H KEAQA VFIAVHGGIGEDGT+Q LL   GV YTGPG +AS
Sbjct: 600 FDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLAS 659

Query: 665 RTCMDKVATSLAVSHLASYGVHTIPKDLRATEEILKSSPDDIWNDLKAKLQTETVCVKPA 724
           RTCMDKV TS A+S+L+ +G+HTI KD++ TE+I+  +  ++W++L  KLQ  T+CVKPA
Sbjct: 660 RTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPA 719

Query: 725 RDGCSTGVARLCCPKDLEVYANALERKLQRMPANCLSRAHGVIEMPVSPPESLIFEPFIE 784
           +DGCSTGVARLC  +DL VY  AL+  + R+P N LS+ HG+IEMP   PE LIFEPF+E
Sbjct: 720 KDGCSTGVARLCSSEDLAVYVQALKDCIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPFVE 779

Query: 785 TDEIIISTKSVDDSTRHLVWKGENKWLEVTVGVVGKRGEMLSLNPSITVKESGDILSLEE 844
           TDEII+S+K    + + L WKG  +W+E+TVGV+GKRG M SL+PS+TVKESGDILSLEE
Sbjct: 780 TDEIIVSSK----AKQQLSWKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEE 835

Query: 845 KFQGGTGINLTPPPSTIMSEEALQKCKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIE 904
           KFQGGTGINLTPPP TIMS+EAL++CK  IE +A TLGLEGFSRIDAFV+V+ GE+L+IE
Sbjct: 836 KFQGGTGINLTPPPPTIMSKEALERCKQGIELIAETLGLEGFSRIDAFVHVETGEVLVIE 895

Query: 905 VNTVPGMTPSTVLIHQALTEKPPIYPHKFFRTLLDLAFAR 944
           VNTVPGMTPSTVLI QAL E+PP+YP +FFRTLL LA  R
Sbjct: 896 VNTVPGMTPSTVLIQQALAEQPPMYPPQFFRTLLHLATQR 935



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,344,186
Number of extensions: 865009
Number of successful extensions: 2066
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2055
Number of HSP's successfully gapped: 1
Length of query: 946
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 838
Effective length of database: 8,145,641
Effective search space: 6826047158
Effective search space used: 6826047158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)