Os07g0687300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SNF1 kinase complex anchoring protein (Fragment).
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Os07g0687300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SNF1 kinase complex anchoring protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 285.7 | 0.794 | 7.23 | 0.745 | 3.84 | 1.64 | -2.79 | -0.165 | -0.796 | 10.7 | 25.79 | 547 | -- | -- |
| 285.54 | 0.787 | 7.23 | 0.726 | 3.87 | 1.68 | -2.86 | -- | -0.782 | 10.7 | 25.81 | 496 | -- | -- |
| 315.52 | 0.827 | 7.23 | 0.845 | 3.82 | 1.5 | -- | -1.24 | -0.837 | 10.6 | 26.2 | 780 | -- | -- |
| 318.6 | 0.831 | 7.24 | 0.617 | 3.89 | 1.69 | -- | -- | -0.809 | 10.7 | 25.89 | 483 | -- | -- |
| 1049.53 | 1.51 | 7.18 | 1.89 | -- | 4.51 | -- | -3.42 | -0.329 | -- | 72.68 | 794 | -- | -- |
| 326.49 | 0.847 | 7.31 | 0.271 | 4.05 | -- | -2.89 | -- | -1.16 | 10.5 | -- | -- | -- | -- |
| 360.74 | 0.889 | 7.31 | 0.155 | 4.06 | -- | -- | -- | -1.17 | 10.5 | -- | -- | -- | -- |
| 1059.12 | 1.52 | 7.26 | 1.25 | -- | 4.47 | -- | -- | -0.497 | -- | 98.22 | 795 | -- | -- |
| 327.01 | 0.842 | 7.26 | -- | 3.97 | 1.45 | -- | -- | -0.908 | 10.8 | 26.2 | 404 | -- | -- |
| 1375.19 | 1.73 | 7.42 | 0.0828 | -- | -- | -- | -- | -1.19 | -- | -- | -- | -- | -- |
| 361.37 | 0.889 | 7.32 | -- | 4.06 | -- | -- | -- | -1.19 | 10.5 | -- | -- | -- | -- |
| 1090.64 | 1.54 | 7.28 | -- | -- | 3.93 | -- | -- | -0.567 | -- | 30.3 | 792 | -- | -- |
| 1375.37 | 1.73 | 7.42 | -- | -- | -- | -- | -- | -1.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 277.92 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 4 | 281.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 6 | 281.44 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 16 | 282.02 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 23 | 282.66 | humidity | 90 | 720 | < th | dose independent | rect. | 21 | 1 |
| 28 | 282.84 | humidity | 80 | 1440 | > th | dose dependent | sin | 20 | NA |
| 54 | 284.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 74 | 284.78 | radiation | 10 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 76 | 284.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 98 | 285.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 105 | 285.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 111 | 285.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 122 | 285.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 129 | 285.56 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 9 |
| 135 | 285.61 | humidity | 90 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 140 | 285.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 149 | 285.81 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 157 | 285.93 | radiation | 10 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 171 | 286.06 | radiation | 10 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 180 | 286.11 | wind | 9 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 185 | 286.15 | radiation | 10 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 230 | 286.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 238 | 286.46 | radiation | 10 | 4320 | > th | dose independent | sin | 15 | NA |
| 281 | 286.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 284 | 286.83 | humidity | 70 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 286 | 286.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 306 | 286.92 | radiation | 10 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 311 | 286.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 313 | 286.95 | radiation | 10 | 4320 | < th | dose dependent | rect. | 13 | 11 |
| 315 | 286.96 | radiation | 10 | 4320 | < th | dose dependent | rect. | 13 | 9 |
| 328 | 287.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 331 | 287.02 | radiation | 10 | 4320 | < th | dose dependent | rect. | 13 | 14 |
| 355 | 287.07 | humidity | 80 | 1440 | > th | dose independent | sin | 20 | NA |
| 360 | 287.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 374 | 287.15 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 403 | 287.32 | humidity | 90 | 720 | < th | dose independent | rect. | 6 | 18 |
| 405 | 287.33 | radiation | 10 | 4320 | < th | dose independent | sin | 14 | NA |
| 431 | 287.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 448 | 287.49 | humidity | 80 | 1440 | < th | dose independent | sin | 20 | NA |
| 498 | 287.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 513 | 287.77 | radiation | 10 | 4320 | < th | dose independent | rect. | 13 | 20 |
| 550 | 287.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 614 | 288.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 640 | 288.27 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 668 | 288.37 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 15 |
| 690 | 288.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 694 | 288.43 | radiation | 10 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 699 | 288.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 701 | 288.45 | radiation | 10 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 709 | 288.47 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 714 | 288.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 715 | 288.48 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 811 | 288.74 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 860 | 288.87 | humidity | 90 | 720 | < th | dose independent | rect. | 15 | 9 |
| 871 | 288.90 | radiation | 10 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 895 | 288.94 | radiation | 10 | 4320 | < th | dose dependent | sin | 16 | NA |
| 934 | 289.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 945 | 289.08 | radiation | 10 | 4320 | < th | dose independent | rect. | 13 | 23 |