BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0687300 Os07g0687300|AK073043
         (316 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21170.2  | chr5:7205718-7208239 FORWARD LENGTH=321            213   2e-55
AT4G16360.3  | chr4:9245571-9246833 FORWARD LENGTH=262            187   6e-48
AT2G28060.1  | chr2:11950174-11950618 REVERSE LENGTH=115           67   2e-11

>AT5G21170.2 | chr5:7205718-7208239 FORWARD LENGTH=321
          Length = 320

 Score =  213 bits (541), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/223 (47%), Positives = 149/223 (66%), Gaps = 8/223 (3%)

Query: 92  PVTPLHRAVDGPPPVFNQILTSEQEEDHDGPPDKLIPTLLVWTLGGKNVYIEGSWDNWKS 151
           PV PL RA + PPP  N I  ++ +   D PP++ IPT++ W  GG +V +EGSWDNW+S
Sbjct: 105 PVAPLQRA-NAPPP--NNIQWNQSQRVFDNPPEQGIPTIITWNQGGNDVAVEGSWDNWRS 161

Query: 152 KQLVHKCGKDHCVMLGLASGVYRYRFIVDGERRFQPDRPREADIMGTISNLIDVHDYVPD 211
           ++ + K GKDH ++  L SG+Y Y+ IVDGE ++ PD P  AD +G + N++DVH++VP+
Sbjct: 162 RKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPE 221

Query: 212 SVDSVSELMAPPSPDSSYGFLAPDDKEFTKEPPALPPQLHLGVLNSRGGSGGKEGECAMP 271
           + +S+ E  APPSPD SYG   P  +++ KEP A+PPQLHL +L    G+  +      P
Sbjct: 222 NPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL----GTTEETAIATKP 277

Query: 272 KHNVLGHVFIGKG-TPPMVAALGTTFRFQSKFVTKVLYKAIQR 313
           +H VL HVFI +G TP  + ALG T RF+SK++T VLYK + R
Sbjct: 278 QHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 320



>AT4G16360.3 | chr4:9245571-9246833 FORWARD LENGTH=262
          Length = 261

 Score =  187 bits (475), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 97/231 (41%), Positives = 141/231 (61%), Gaps = 6/231 (2%)

Query: 86  MFVPQSPVTPLHR--AVDGPPPVFNQILTSEQEEDHDGPPDKLIPTLLVWTLGGKNVYIE 143
           MF PQ PV PL R   +  P P + Q  +S  EE  +   ++ IPT++ W  GGK + +E
Sbjct: 34  MFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASN---EQGIPTMITWCHGGKEIAVE 90

Query: 144 GSWDNWKSKQLVHKCGKDHCVMLGLASGVYRYRFIVDGERRFQPDRPREADIMGTISNLI 203
           GSWDNWK++  + + GKD  +M  L SGVY YRFIVDG+ R  P+ P   D  G   N++
Sbjct: 91  GSWDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNIL 150

Query: 204 DVHDYVPDSVDSVSELMAPPSPDSSYGFLAPDDKEFTKEPPALPPQLHLGVLNSRGGSGG 263
           D+ DYVP+ + S+S    P SP++SY  L    ++++KEPP +PP L + +LN    +  
Sbjct: 151 DLQDYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPD 210

Query: 264 KEGECAMPKHNVLGHVFIGKG-TPPMVAALGTTFRFQSKFVTKVLYKAIQR 313
                  P+H +L H+++ KG + P V ALG+T RF +K+VT VLYK++QR
Sbjct: 211 IPSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 261



>AT2G28060.1 | chr2:11950174-11950618 REVERSE LENGTH=115
          Length = 114

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 221 APPSPDSSYGFLAPDDKEFTKEPPALPPQLHLGVLNSRGGSGGKEGECAMPKHNVLGHVF 280
            P SP SSY  +    ++ T++PPA+PP L   +L   G  G  E   A P++ VL H++
Sbjct: 19  VPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLL---GNQGSMELAYA-PQNVVLNHLY 74

Query: 281 I-GKGTPPMVAALGTTFRFQSKFVTKVLYKAIQR 313
           I  +  P  V ALG + RF++KFVT V+YK +QR
Sbjct: 75  IENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQR 108



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,517,774
Number of extensions: 301713
Number of successful extensions: 728
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 725
Number of HSP's successfully gapped: 3
Length of query: 316
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,392,385
Effective search space: 1821147545
Effective search space used: 1821147545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)