Os07g0673200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to F22D16.14 protein (RING finger family protein).
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Os07g0673200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to F22D16.14 protein (RING finger family protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.15 | 0.517 | 11.2 | -2.71 | 1.91 | 1.19 | -0.687 | -2.92 | -0.0727 | 3.26 | 24.52 | 5646 | -- | -- |
| 122.11 | 0.515 | 11.1 | -2.1 | 1.92 | 1.08 | -0.505 | -- | -0.101 | 3.11 | 18.47 | 7186 | -- | -- |
| 122.59 | 0.516 | 11.2 | -2.73 | 1.91 | 1.19 | -- | -2.97 | -0.0773 | 3.33 | 24.33 | 5621 | -- | -- |
| 122.93 | 0.516 | 11.1 | -2.2 | 1.89 | 1.24 | -- | -- | -0.155 | 3.37 | 16.69 | 8422 | -- | -- |
| 311.28 | 0.822 | 11.2 | -2.84 | -- | 1.59 | -- | -3.22 | -0.156 | -- | 23.55 | 2616 | -- | -- |
| 155.9 | 0.585 | 11 | -1.52 | 1.97 | -- | -0.61 | -- | 0.254 | 3.24 | -- | -- | -- | -- |
| 157.07 | 0.587 | 11 | -1.51 | 1.97 | -- | -- | -- | 0.258 | 3.28 | -- | -- | -- | -- |
| 301.9 | 0.809 | 11.1 | -1.89 | -- | 1.48 | -- | -- | 0.0818 | -- | 23.9 | 1174 | -- | -- |
| 203.12 | 0.664 | 11 | -- | 1.87 | 0.459 | -- | -- | 0.423 | 3.25 | 33 | 6973 | -- | -- |
| 377.24 | 0.908 | 11 | -1.42 | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
| 216.85 | 0.689 | 11 | -- | 1.94 | -- | -- | -- | 0.425 | 3.28 | -- | -- | -- | -- |
| 359.54 | 0.886 | 11 | -- | -- | -1.66 | -- | -- | 0.621 | -- | 24.1 | 1165 | -- | -- |
| 430.61 | 0.969 | 11 | -- | -- | -- | -- | -- | 0.467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.42 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 7 | 110.33 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 25 | 113.42 | temperature | 10.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 50 | 115.03 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 53 | 115.20 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 54 | 115.22 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 15 |
| 64 | 115.73 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 87 | 116.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 88 | 116.52 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 5 |
| 119 | 117.33 | temperature | 30.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 123 | 117.48 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 129 | 117.60 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 141 | 117.96 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 169 | 118.39 | temperature | 30.0 | 720 | < th | dose independent | sin | 12 | NA |
| 170 | 118.39 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 174 | 118.44 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 182 | 118.59 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 184 | 118.61 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 13 |
| 199 | 118.72 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 14 | 10 |
| 212 | 118.86 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 219 | 118.97 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 226 | 119.02 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 229 | 119.03 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 230 | 119.03 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 236 | 119.06 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 239 | 119.06 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 265 | 119.16 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 19 | NA |
| 269 | 119.18 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 273 | 119.20 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 278 | 119.20 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 290 | 119.22 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 292 | 119.23 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 300 | 119.26 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 310 | 119.27 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 20 |
| 315 | 119.29 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 401 | 119.42 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 407 | 119.43 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 424 | 119.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 427 | 119.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 437 | 119.46 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 444 | 119.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 455 | 119.49 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 467 | 119.51 | temperature | 25.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 479 | 119.51 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 484 | 119.51 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 8 |
| 488 | 119.52 | temperature | 25.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 578 | 119.56 | temperature | 20.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 697 | 119.63 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 744 | 119.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 765 | 119.67 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 835 | 119.70 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 866 | 119.72 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 869 | 119.72 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 12 | 19 |
| 910 | 119.74 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 973 | 119.76 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 15 |