Os07g0673100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein S8E family protein.
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Os07g0673100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein S8E family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.69 | 0.277 | 11.6 | 0.0705 | 0.301 | 0.745 | 0.363 | 0.0265 | -0.0126 | 0.076 | 20.8 | 1586 | -- | -- |
| 34.66 | 0.274 | 11.7 | 0.0507 | 0.26 | 0.674 | 0.335 | -- | -0.0316 | 23.9 | 21.25 | 2705 | -- | -- |
| 35.26 | 0.277 | 11.6 | 0.0597 | 0.299 | 0.748 | -- | 0.0403 | -0.0129 | 0.0838 | 20.8 | 1587 | -- | -- |
| 35.25 | 0.277 | 11.7 | -0.00474 | 0.277 | 0.707 | -- | -- | -0.0514 | 23.9 | 21.31 | 2810 | -- | -- |
| 39.41 | 0.292 | 11.6 | 0.0615 | -- | 0.723 | -- | 0.0667 | -0.0157 | -- | 21.33 | 2435 | -- | -- |
| 47.32 | 0.323 | 11.6 | 0.38 | 0.304 | -- | 0.381 | -- | 0.165 | 0.0436 | -- | -- | -- | -- |
| 47.95 | 0.324 | 11.6 | 0.365 | 0.302 | -- | -- | -- | 0.163 | 0.128 | -- | -- | -- | -- |
| 39.3 | 0.292 | 11.7 | 0.0105 | -- | 0.728 | -- | -- | -0.0513 | -- | 21.4 | 2469 | -- | -- |
| 35.24 | 0.276 | 11.7 | -- | 0.275 | 0.705 | -- | -- | -0.0511 | 23.8 | 21.3 | 2817 | -- | -- |
| 53.71 | 0.342 | 11.6 | 0.374 | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
| 51.46 | 0.336 | 11.6 | -- | 0.307 | -- | -- | -- | 0.123 | 0.194 | -- | -- | -- | -- |
| 39.3 | 0.292 | 11.7 | -- | -- | 0.732 | -- | -- | -0.0536 | -- | 21.31 | 2470 | -- | -- |
| 57.41 | 0.354 | 11.6 | -- | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 2 | 33.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 5 | 33.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 71 | 34.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 92 | 34.49 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 107 | 34.56 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 114 | 34.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 151 | 34.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 224 | 34.89 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 262 | 34.96 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 354 | 35.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 402 | 35.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 410 | 35.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 430 | 35.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 493 | 35.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 498 | 35.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 650 | 35.47 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |