BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0673100 Os07g0673100|AK103678
         (259 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06360.1  | chr5:1944835-1946512 FORWARD LENGTH=261            424   e-119

>AT5G06360.1 | chr5:1944835-1946512 FORWARD LENGTH=261
          Length = 260

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/260 (79%), Positives = 229/260 (88%), Gaps = 1/260 (0%)

Query: 1   MPQGDHIELHQKRHGRRLDYXXXXXXXXXXXVHKRSRDARQLLGAKGKRFAKKRYAEKAQ 60
           MPQGD+I+LH+KR+G RLD+           VHK S  A++ LG KGK  AKK YAEKA 
Sbjct: 1   MPQGDYIDLHRKRNGYRLDHFERKRKKEAREVHKHSTMAQKSLGIKGKMIAKKNYAEKAL 60

Query: 61  MKKTLKMHDESTSRQKVDD-VQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVP 119
           MKKTLKMH+ES+SR+K D+ VQEGA+P YLLDR+ T RAKVLSNTIKQKR EKAGKWEVP
Sbjct: 61  MKKTLKMHEESSSRRKADENVQEGAVPAYLLDREDTTRAKVLSNTIKQKRKEKAGKWEVP 120

Query: 120 LPKVRPVAEEEMFKVLRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTK 179
           LPKVRPVAE+EMF+V+R+GKRKTKQWKRMVTKATFVGP FTRKPPKYERFIRP+GLRFTK
Sbjct: 121 LPKVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTK 180

Query: 180 AHVTHPELKCTFNLDIISVKKNPNGQMYSTLGVLTRGTIIEVNVSELGLVTPAGKVVWGK 239
           AHVTHPELKCTF L+II +KKNPNG MY++LGV+TRGTIIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFCLEIIGIKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGK 240

Query: 240 YAQVTNNPENDGCINAVLLV 259
           YAQVTNNPENDGCINAVLLV
Sbjct: 241 YAQVTNNPENDGCINAVLLV 260



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,481,068
Number of extensions: 218347
Number of successful extensions: 603
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)