Os07g0673000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0673000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.06 | 0.349 | 7.87 | 0.264 | 0.37 | -0.583 | -0.877 | -0.486 | -0.0139 | 1.09 | 20.8 | 103 | -- | -- |
| 56.03 | 0.349 | 7.86 | 0.365 | 0.38 | -0.553 | -0.641 | -- | 0.00796 | 0.977 | 20.8 | 104 | -- | -- |
| 57.62 | 0.354 | 7.86 | 0.358 | 0.384 | -0.559 | -- | -0.139 | 0.00367 | 1.1 | 20.7 | 104 | -- | -- |
| 57.71 | 0.354 | 7.86 | 0.387 | 0.381 | -0.551 | -- | -- | 0.0102 | 1.06 | 20.8 | 104 | -- | -- |
| 65.7 | 0.378 | 7.85 | 0.396 | -- | -0.687 | -- | -0.196 | 0.0366 | -- | 20.8 | 89 | -- | -- |
| 68.97 | 0.389 | 7.89 | 0.209 | 0.521 | -- | -0.6 | -- | -0.109 | 1.23 | -- | -- | -- | -- |
| 70.45 | 0.393 | 7.89 | 0.23 | 0.522 | -- | -- | -- | -0.105 | 1.26 | -- | -- | -- | -- |
| 65.9 | 0.378 | 7.85 | 0.433 | -- | -0.672 | -- | -- | 0.045 | -- | 20.83 | 104 | -- | -- |
| 61.46 | 0.365 | 7.87 | -- | 0.404 | -0.485 | -- | -- | -0.0446 | 1.13 | 20.75 | 104 | -- | -- |
| 87.3 | 0.437 | 7.88 | 0.25 | -- | -- | -- | -- | -0.0947 | -- | -- | -- | -- | -- |
| 71.85 | 0.396 | 7.89 | -- | 0.526 | -- | -- | -- | -0.131 | 1.28 | -- | -- | -- | -- |
| 70.62 | 0.391 | 7.86 | -- | -- | -0.608 | -- | -- | -0.0147 | -- | 20.9 | 72 | -- | -- |
| 88.95 | 0.44 | 7.89 | -- | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 10 | 51.05 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 22 |
| 46 | 52.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 118 | 53.99 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 10 |
| 205 | 54.93 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 213 | 54.98 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 11 |
| 222 | 55.04 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 18 |
| 245 | 55.26 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 9 |
| 276 | 55.79 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 18 |
| 292 | 55.89 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 13 |
| 297 | 55.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 310 | 56.06 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 320 | 56.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 342 | 56.28 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 23 |
| 346 | 56.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 350 | 56.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 359 | 56.36 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 361 | 56.37 | temperature | 25 | 90 | < th | dose dependent | sin | 9 | NA |
| 370 | 56.40 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 371 | 56.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 378 | 56.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 391 | 56.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 409 | 56.56 | humidity | 50 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 413 | 56.57 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 418 | 56.57 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 430 | 56.60 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 431 | 56.60 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 452 | 56.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 4 |
| 459 | 56.70 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 23 |
| 463 | 56.70 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 474 | 56.72 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 513 | 56.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 530 | 56.92 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 546 | 57.01 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 558 | 57.08 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 563 | 57.12 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 16 |
| 571 | 57.16 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 16 |
| 572 | 57.16 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 581 | 57.19 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 22 |
| 582 | 57.19 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 23 |
| 583 | 57.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 588 | 57.20 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 20 |
| 601 | 57.23 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 23 |
| 610 | 57.25 | humidity | 50 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 625 | 57.28 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 632 | 57.30 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 642 | 57.34 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 668 | 57.39 | temperature | 10 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 670 | 57.40 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 19 |
| 685 | 57.44 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 686 | 57.44 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 692 | 57.45 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 704 | 57.47 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 22 |
| 739 | 57.53 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 753 | 57.55 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 762 | 57.57 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 16 |
| 772 | 57.58 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 773 | 57.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 785 | 57.60 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 22 |
| 800 | 57.62 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 806 | 57.62 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 814 | 57.63 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 844 | 57.67 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 847 | 57.68 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 868 | 57.71 | radiation | 40 | 30 | < th | dose independent | rect. | 5 | 19 |
| 877 | 57.72 | radiation | 20 | 30 | < th | dose independent | rect. | 5 | 19 |
| 885 | 57.73 | radiation | 40 | 30 | < th | dose dependent | rect. | 5 | 10 |
| 944 | 57.81 | temperature | 20 | 90 | < th | dose independent | sin | 7 | NA |
| 965 | 57.84 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |