BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0673000 Os07g0673000|AK063364
         (298 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27710.1  | chr5:9813069-9815018 FORWARD LENGTH=336            355   2e-98

>AT5G27710.1 | chr5:9813069-9815018 FORWARD LENGTH=336
          Length = 335

 Score =  355 bits (910), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 160/232 (68%), Positives = 196/232 (84%)

Query: 67  RGGADEADGMVMWPPAPVMELARLAVDSGGDPGAIHRALDPTMLPVPDVQRAKRNKCQLT 126
           R   +E + ++ WPP  V+ELARLAVDSGGDPG+I R L+P M+PVPDV+R++++KCQLT
Sbjct: 104 RSKFEEENSLIWWPPESVLELARLAVDSGGDPGSIQRTLNPKMIPVPDVERSRKDKCQLT 163

Query: 127 RTPYGRRFANKDINSYLAFLFELIAARGPSVGLNVSLSRYDFFHGHLFLASGTGRLGILF 186
           RTPYGR F  +++NSY  FLF LI +RGPSVGLNVSLSRYD FHGHLFLAS +GRLGILF
Sbjct: 164 RTPYGRHFIAEEVNSYFEFLFHLIESRGPSVGLNVSLSRYDLFHGHLFLASESGRLGILF 223

Query: 187 HAKEYPAFDKELFPYSLGFCQAGSNVVYDDSMNLRNILWLAPLPSNETKAWLSPGVLVVL 246
           HAKEYPA+DK++FPY++G+CQ GS+V Y+DSMNLRNILWLAPLPSN +  W++PGVLVVL
Sbjct: 224 HAKEYPAYDKKVFPYNMGYCQRGSDVKYNDSMNLRNILWLAPLPSNSSPDWVAPGVLVVL 283

Query: 247 DAHPDGIIYQDMIRDYVRDVRTIYEDDFGEVSVDVNYLNVANSAPANRVFIC 298
           DAHPDGIIY+D+I DYV+ VRTIYEDD G  +VDVNYLNV    P  ++F+C
Sbjct: 284 DAHPDGIIYRDLIPDYVKFVRTIYEDDLGTTAVDVNYLNVGAHEPDYQLFMC 335



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,045,030
Number of extensions: 252593
Number of successful extensions: 432
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)