Os07g0669100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xylose isomerase (EC 5.3.1.5).
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Os07g0669100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xylose isomerase (EC 5.3.1.5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.23 | 0.245 | 12.1 | -1.03 | 0.632 | -1.21 | 0.43 | -0.469 | -0.237 | 18.4 | 24.85 | 787 | -- | -- |
| 27.51 | 0.244 | 12.1 | -1.11 | 0.633 | -1.16 | 0.471 | -- | -0.259 | 18.4 | 25.18 | 786 | -- | -- |
| 27.67 | 0.245 | 12.1 | -1.03 | 0.638 | -1.22 | -- | -0.568 | -0.232 | 18.5 | 24.78 | 791 | -- | -- |
| 28.12 | 0.247 | 12.1 | -1.12 | 0.63 | -1.16 | -- | -- | -0.255 | 18.4 | 25.25 | 799 | -- | -- |
| 36.82 | 0.283 | 12.1 | -1.16 | -- | -1.6 | -- | -0.0302 | -0.252 | -- | 44.2 | 533 | -- | -- |
| 47.5 | 0.323 | 12 | -0.781 | 0.727 | -- | 0.42 | -- | -0.0111 | 19.2 | -- | -- | -- | -- |
| 47.96 | 0.324 | 12 | -0.79 | 0.727 | -- | -- | -- | -0.0104 | 19.2 | -- | -- | -- | -- |
| 35.93 | 0.279 | 12.1 | -1.17 | -- | -1.58 | -- | -- | -0.283 | -- | 30.98 | 505 | -- | -- |
| 56.75 | 0.351 | 12 | -- | 0.553 | -0.722 | -- | -- | -0.0484 | 19.7 | 29.81 | 397 | -- | -- |
| 75.99 | 0.407 | 12 | -0.803 | -- | -- | -- | -- | -0.0229 | -- | -- | -- | -- | -- |
| 64.43 | 0.375 | 12 | -- | 0.735 | -- | -- | -- | 0.0776 | 19.2 | -- | -- | -- | -- |
| 69.54 | 0.388 | 12 | -- | -- | -1.19 | -- | -- | -0.0754 | -- | 38.71 | 493 | -- | -- |
| 93.01 | 0.45 | 12 | -- | -- | -- | -- | -- | 0.0663 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 6 | 25.58 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 14 | 25.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 36 | 26.06 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 255 | 27.36 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 351 | 27.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 383 | 27.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 629 | 29.14 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 667 | 29.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 758 | 29.61 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 776 | 29.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 778 | 29.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 799 | 29.69 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 905 | 29.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 913 | 29.80 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 927 | 29.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |