BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0669100 Os07g0669100|AK072249
         (479 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57655.2  | chr5:23347030-23349805 FORWARD LENGTH=478          785   0.0  

>AT5G57655.2 | chr5:23347030-23349805 FORWARD LENGTH=478
          Length = 477

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/454 (80%), Positives = 406/454 (89%), Gaps = 2/454 (0%)

Query: 26  TCPADLDSKCGDAASGDWEGEFFPGIPKIKYEGPSSKNPLAYKWYNAEEVILGKKMKDWM 85
           TCPADL  KC D  S DW+G+FFP IPKIKYEGPSSKNPLAY+WYNAEE ILGKKMKDW 
Sbjct: 26  TCPADLGGKCSD--SDDWQGDFFPEIPKIKYEGPSSKNPLAYRWYNAEEEILGKKMKDWF 83

Query: 86  RFSVAFWHTFRGTGGDPFGAPTKSWPWEDGTNSLDMAKRRMRAHFEFMEKLGVDRWCFHD 145
           RFSVAFWHTFRGTGGDPFGA TK WPWEDGTNS+ MAKRRMRA+FEF++KLGVD WCFHD
Sbjct: 84  RFSVAFWHTFRGTGGDPFGAATKYWPWEDGTNSVSMAKRRMRANFEFLKKLGVDWWCFHD 143

Query: 146 RDIAPDGKTLTETNKNLDEIVELAKKLQEETNIKPLWGTAQLFMHPRYMHGAATSPEVKV 205
           RDIAPDG TL E+NKNLDE++ELAK+LQ+ + IKPLWGTAQLF+HPRYMHG ATS EV V
Sbjct: 144 RDIAPDGTTLEESNKNLDEVIELAKELQKGSKIKPLWGTAQLFLHPRYMHGGATSSEVGV 203

Query: 206 YAYGAAQVKKALEVTHYLGGENYVFWGGREGYQTLLNTDMKRELDHLASFLQAAVDYKKK 265
           YAY AAQVKKA+EVTHYLGGENYVFWGGREGYQTLLNTDM RELDHLA F +AAV YKKK
Sbjct: 204 YAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQTLLNTDMGRELDHLARFFEAAVAYKKK 263

Query: 266 IGFNGTLLIEPKPQEPTKHQYDWDVATTFSFLQKYGLTGEFKINVECNHATLSGHSCHHE 325
           IGF GTLLIEPKPQEPTKHQYDWD AT  +FL+KYGL  EFK+N+ECNHATLSGH+CHHE
Sbjct: 264 IGFKGTLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIDEFKLNIECNHATLSGHTCHHE 323

Query: 326 LETARINGLLGNIDANTGDPQIGWDTDQFLTDISEATLVMSSVVKNGGLAPGGFNFDAKL 385
           LETARINGLLGNIDANTGD Q GWDTDQFLTD+ EAT+VM SV+KNGG+APGGFNFDAKL
Sbjct: 324 LETARINGLLGNIDANTGDAQTGWDTDQFLTDVGEATMVMMSVIKNGGIAPGGFNFDAKL 383

Query: 386 RRESTDVEDMFLAHISGMDTLARGLRNVVKLIEDGSLDELVRKRYQSFDSEIGALIEAGK 445
           RRESTDVED+F+AHISGMDT+ARGLRN VK++E+GSL ELVRKRY ++DSE+G  IE GK
Sbjct: 384 RRESTDVEDLFIAHISGMDTMARGLRNAVKILEEGSLSELVRKRYATWDSELGKQIEEGK 443

Query: 446 GDFETLEKKVLEWGEPIVPSGKQELAEILFQAAL 479
            DFE LEKK  E+GEP V S KQELAE++FQ+A+
Sbjct: 444 ADFEYLEKKAKEFGEPKVSSAKQELAEMIFQSAM 477



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,781,920
Number of extensions: 484492
Number of successful extensions: 1303
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1302
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 377
Effective length of database: 8,310,137
Effective search space: 3132921649
Effective search space used: 3132921649
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)