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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0664600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.66 (0.0388) R2 : 0.0305
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.309 (0.0816) R2dN8 : 0.0393 R2N8 : 0.0305
σ : 0.73
deviance : 244.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
221.17 0.699 3.7 -0.73 0.0613 0.951 -0.893 3.16 0.29 7.08 0.8984 4289 -- --
234.27 0.713 3.67 -0.463 0.0623 0.777 -0.758 -- 0.326 7.08 2.72 4211 -- --
223.13 0.696 3.7 -0.78 0.0834 0.996 -- 3.35 0.297 7.54 0.8767 4292 -- --
230.32 0.707 3.67 -0.215 0.0123 0.722 -- -- 0.384 19.1 3.67 2786 -- --
223.38 0.696 3.7 -0.727 -- 0.959 -- 3.11 0.297 -- 0.87 4290 -- --
240.46 0.727 3.66 -0.224 0.213 -- 0.139 -- 0.287 12.6 -- -- -- --
240.5 0.726 3.66 -0.22 0.213 -- -- -- 0.287 12.1 -- -- -- --
229.39 0.705 3.67 -0.189 -- 0.708 -- -- 0.399 -- 2.367 2789 -- --
230.09 0.706 3.67 -- 0.0381 0.8 -- -- 0.425 18.6 2.06 2786 -- --
243.37 0.729 3.66 -0.227 -- -- -- -- 0.284 -- -- -- -- --
241.78 0.727 3.65 -- 0.216 -- -- -- 0.311 12.1 -- -- -- --
230.04 0.706 3.67 -- -- 0.793 -- -- 0.438 -- 2.06 2788 -- --
244.72 0.73 3.66 -- -- -- -- -- 0.309 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.19 precipitation 0.1 43200 > th dose independent rect. 24 2
2 207.19 precipitation 0.1 43200 > th dose dependent rect. 24 2
5 207.29 precipitation 0.1 43200 < th dose independent rect. 24 2
6 207.29 precipitation 0.1 43200 < th dose dependent rect. 24 2
13 209.27 wind 1.0 43200 < th dose dependent rect. 17 6
16 209.66 wind 3.0 14400 < th dose dependent rect. 7 18
22 210.03 wind 1.0 43200 > th dose independent rect. 4 21
24 210.07 wind 3.0 14400 < th dose dependent rect. 11 15
33 210.28 wind 3.0 14400 < th dose dependent rect. 7 11
34 210.29 wind 1.0 43200 < th dose independent rect. 17 6
43 210.40 wind 1.0 43200 > th dose independent rect. 17 5
44 210.40 wind 3.0 14400 < th dose dependent sin 23 NA
47 210.41 wind 3.0 14400 < th dose dependent rect. 6 14
50 210.46 wind 1.0 43200 > th dose independent rect. 14 12
73 210.68 wind 1.0 43200 > th dose independent sin 16 NA
78 210.70 wind 3.0 14400 < th dose dependent sin 17 NA
82 210.72 wind 1.0 43200 > th dose independent rect. 14 1
92 210.78 humidity 60.0 43200 > th dose dependent rect. 1 8
96 210.80 wind 1.0 14400 < th dose independent rect. 13 13
107 210.86 wind 1.0 14400 < th dose dependent sin 20 NA
112 210.90 wind 1.0 43200 > th dose independent rect. 18 3
135 210.99 wind 1.0 43200 < th dose independent rect. 6 19
140 211.01 wind 1.0 43200 < th dose independent rect. 4 21
150 211.07 humidity 80.0 43200 > th dose dependent rect. 4 1
154 211.09 wind 1.0 14400 < th dose independent sin 20 NA
178 211.17 wind 1.0 43200 < th dose independent rect. 6 21
196 211.24 wind 1.0 14400 < th dose independent rect. 9 17
222 211.33 wind 1.0 43200 < th dose independent sin 17 NA
250 211.45 wind 1.0 14400 < th dose independent rect. 11 15
257 211.47 wind 1.0 14400 < th dose independent rect. 11 7
288 211.57 wind 1.0 14400 > th dose independent sin 21 NA
289 211.57 wind 1.0 43200 < th dose independent rect. 14 9
353 211.74 wind 1.0 14400 < th dose independent rect. 9 9
400 211.83 wind 1.0 43200 < th dose independent rect. 14 1
406 211.84 wind 1.0 43200 > th dose independent rect. 24 1
407 211.84 humidity 80.0 43200 > th dose independent rect. 2 11
473 211.97 wind 1.0 14400 < th dose independent rect. 7 14
481 211.98 wind 1.0 43200 < th dose independent rect. 24 1
505 212.04 humidity 80.0 43200 < th dose independent rect. 7 6
506 212.04 wind 1.0 14400 > th dose independent rect. 9 9
510 212.04 humidity 90.0 43200 < th dose dependent rect. 20 7
537 212.08 wind 1.0 14400 > th dose independent rect. 11 7
545 212.10 humidity 50.0 43200 > th dose dependent sin 9 NA
568 212.13 humidity 80.0 43200 > th dose independent rect. 24 14
575 212.14 wind 1.0 14400 > th dose independent rect. 7 14
583 212.15 humidity 60.0 43200 > th dose dependent rect. 23 1
639 212.23 humidity 90.0 43200 < th dose dependent rect. 24 1
646 212.24 wind 3.0 14400 < th dose independent rect. 7 10
655 212.25 humidity 90.0 43200 < th dose dependent rect. 20 13
698 212.32 wind 3.0 14400 < th dose independent rect. 6 12
739 212.37 humidity 80.0 43200 > th dose independent rect. 6 7
851 212.53 wind 1.0 43200 > th dose independent rect. 19 7
859 212.54 wind 3.0 14400 > th dose independent rect. 7 10
870 212.56 humidity 80.0 43200 < th dose independent rect. 1 13
873 212.56 wind 3.0 43200 < th dose dependent rect. 20 1
889 212.58 humidity 80.0 43200 > th dose independent rect. 7 5
936 212.64 wind 3.0 14400 < th dose independent sin 0 NA
959 212.66 humidity 70.0 43200 > th dose dependent rect. 7 5
974 212.68 wind 1.0 43200 > th dose independent rect. 11 11
999 212.72 humidity 90.0 43200 < th dose dependent sin 10 NA