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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0664100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0276) R2 : 0.00382
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0768 (0.0581) R2dN8 : 0.00493 R2N8 : 0.00382
σ : 0.52
deviance : 124.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.97 0.51 3.07 -0.266 0.256 0.584 -0.366 -4.19 0.0878 7.39 30.4 10 -- --
119.44 0.513 3.04 -0.00199 0.263 0.205 -0.364 -- 0.0856 7.44 31.2 7 -- --
118.33 0.507 3.07 -0.271 0.254 0.588 -- -4.13 0.0899 7.34 30.41 9 -- --
119.78 0.51 3.04 -0.0127 0.265 0.221 -- -- 0.0875 7.3 31.28 6 -- --
121.69 0.514 3.07 -0.229 -- 0.536 -- -4.02 0.0916 -- 30.9 7 -- --
120.35 0.514 3.04 0.0149 0.245 -- -0.398 -- 0.0737 7.8 -- -- -- --
120.81 0.515 3.04 0.00458 0.245 -- -- -- 0.0742 7.82 -- -- -- --
123.43 0.52 3.05 -0.00341 -- 0.163 -- -- 0.0878 -- 31.28 6 -- --
119.79 0.51 3.04 -- 0.265 0.219 -- -- 0.0887 7.31 31.28 6 -- --
124.05 0.52 3.05 0.00747 -- -- -- -- 0.0776 -- -- -- -- --
120.81 0.514 3.04 -- 0.245 -- -- -- 0.0737 7.82 -- -- -- --
123.44 0.519 3.05 -- -- 0.162 -- -- 0.0882 -- 31.28 6 -- --
124.05 0.52 3.05 -- -- -- -- -- 0.0768 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.87 temperature 25.0 30 > th dose dependent rect. 6 1
2 107.14 atmosphere 1010.0 10 < th dose independent rect. 6 1
4 107.35 atmosphere 1010.0 30 < th dose dependent rect. 6 1
6 107.74 radiation 10.0 30 < th dose independent rect. 6 1
8 109.05 wind 3.0 30 > th dose dependent rect. 6 1
10 110.70 wind 3.0 30 > th dose independent rect. 6 1
13 111.80 humidity 90.0 30 < th dose dependent rect. 6 1
17 112.54 radiation 1.0 10 > th dose dependent rect. 6 1
21 112.89 radiation 10.0 30 < th dose dependent rect. 6 1
26 113.10 temperature 25.0 30 > th dose independent rect. 6 1
28 113.50 temperature 25.0 30 > th dose independent rect. 4 3
44 114.02 wind 1.0 30 < th dose independent rect. 6 1
47 114.11 humidity 90.0 30 < th dose independent rect. 6 1
48 114.13 wind 5.0 30 < th dose independent rect. 6 1
51 114.13 wind 9.0 1440 < th dose independent rect. 7 1
52 114.13 temperature 10.0 30 > th dose independent rect. 6 1
54 114.13 temperature 10.0 1440 > th dose independent rect. 7 1
58 114.13 temperature 30.0 30 < th dose independent rect. 6 1
59 114.13 temperature 30.0 1440 < th dose independent rect. 7 1
63 114.13 humidity 50.0 30 > th dose independent rect. 6 1
66 114.13 humidity 50.0 1440 > th dose independent rect. 7 1
72 114.13 atmosphere 995.0 30 > th dose independent rect. 6 1
73 114.13 atmosphere 995.0 1440 > th dose independent rect. 7 1
75 114.13 atmosphere 1015.0 1440 < th dose independent rect. 7 1
79 114.13 precipitation 0.1 30 < th dose independent rect. 6 1
80 114.13 temperature 10.0 30 > th dose independent rect. 7 23
81 114.13 temperature 10.0 1440 > th dose independent rect. 8 23
84 114.13 precipitation 0.1 30 < th dose dependent rect. 6 1
89 114.17 radiation 1.0 30 > th dose independent rect. 6 1
92 114.31 radiation 40.0 1440 < th dose independent rect. 7 1
114 114.45 wind 9.0 30 < th dose independent rect. 7 23
115 114.45 humidity 50.0 30 > th dose dependent rect. 6 1
120 114.56 wind 9.0 30 < th dose dependent rect. 6 1
130 114.84 atmosphere 995.0 30 > th dose dependent rect. 6 1
135 114.93 humidity 90.0 10 < th dose independent rect. 4 3
145 115.11 humidity 90.0 10 < th dose independent rect. 2 5
148 115.30 atmosphere 1005.0 270 > th dose dependent rect. 3 1
160 115.65 temperature 30.0 30 < th dose dependent rect. 6 1
161 115.66 atmosphere 1005.0 90 > th dose dependent rect. 3 4
215 115.81 humidity 90.0 10 < th dose independent rect. 4 1
229 116.05 temperature 25.0 10 > th dose independent rect. 4 1
240 116.14 atmosphere 995.0 30 > th dose independent rect. 7 23
244 116.18 atmosphere 1005.0 30 > th dose dependent rect. 4 1
252 116.30 wind 7.0 1440 < th dose independent rect. 5 1
254 116.30 temperature 10.0 1440 > th dose independent rect. 5 1
257 116.30 temperature 30.0 1440 < th dose independent rect. 5 1
261 116.30 humidity 50.0 1440 > th dose independent rect. 5 1
270 116.30 atmosphere 995.0 1440 > th dose independent rect. 5 1
271 116.30 atmosphere 1015.0 1440 < th dose independent rect. 5 1
272 116.30 radiation 20.0 1440 < th dose independent rect. 5 1
281 116.30 temperature 10.0 1440 > th dose independent rect. 6 23
285 116.32 temperature 30.0 30 < th dose independent rect. 5 23
286 116.32 precipitation 0.1 30 < th dose independent rect. 7 23
288 116.32 precipitation 0.1 30 < th dose dependent rect. 7 23
304 116.44 wind 1.0 30 > th dose independent rect. 4 1
320 116.52 atmosphere 1005.0 30 > th dose independent rect. 4 1
321 116.54 wind 3.0 30 < th dose independent rect. 4 1
329 116.56 temperature 10.0 30 > th dose independent rect. 4 1
331 116.56 temperature 30.0 30 < th dose independent rect. 4 1
332 116.56 humidity 50.0 30 > th dose independent rect. 4 1
336 116.56 atmosphere 995.0 30 > th dose independent rect. 4 1
337 116.56 atmosphere 1010.0 30 < th dose independent rect. 4 1
339 116.56 radiation 1.0 30 < th dose independent rect. 4 1
344 116.56 precipitation 0.1 30 < th dose independent rect. 4 1
345 116.56 temperature 10.0 30 > th dose independent rect. 5 23
346 116.56 wind 9.0 30 < th dose dependent rect. 4 1
347 116.56 temperature 10.0 30 > th dose dependent rect. 4 1
349 116.56 radiation 10.0 30 < th dose dependent rect. 4 1
353 116.56 precipitation 0.1 30 < th dose dependent rect. 4 1
365 116.59 wind 1.0 30 > th dose dependent rect. 4 1
366 116.59 temperature 30.0 30 < th dose dependent rect. 4 1
367 116.59 humidity 50.0 30 > th dose dependent rect. 4 1
374 116.62 temperature 30.0 30 < th dose independent rect. 7 23
379 116.64 atmosphere 1015.0 30 < th dose dependent rect. 4 1
380 116.66 humidity 50.0 30 > th dose independent rect. 7 23
401 116.77 humidity 90.0 10 < th dose dependent rect. 4 1
404 116.78 wind 9.0 30 < th dose independent rect. 5 23
409 116.80 wind 1.0 270 < th dose dependent rect. 2 1
455 116.91 atmosphere 995.0 30 > th dose independent rect. 5 23
505 117.07 precipitation 0.1 30 < th dose independent rect. 5 23
508 117.07 precipitation 0.1 30 < th dose dependent rect. 5 23
526 117.19 wind 1.0 90 > th dose independent rect. 3 4
582 117.45 humidity 80.0 4320 < th dose dependent rect. 3 1
583 117.45 humidity 60.0 30 < th dose dependent rect. 17 17
588 117.48 atmosphere 1015.0 30 < th dose independent rect. 7 23
595 117.53 temperature 30.0 30 > th dose dependent rect. 17 20
597 117.55 wind 1.0 270 < th dose independent rect. 2 1
619 117.60 humidity 90.0 10 < th dose dependent rect. 4 3
621 117.61 humidity 90.0 720 < th dose independent rect. 4 1
641 117.65 radiation 1.0 30 > th dose independent rect. 7 23
662 117.72 humidity 90.0 720 < th dose independent rect. 1 6
674 117.75 wind 1.0 30 > th dose dependent rect. 4 3
705 117.83 temperature 30.0 30 < th dose independent rect. 7 21
721 117.86 atmosphere 1005.0 30 > th dose independent rect. 4 3
736 117.90 humidity 80.0 4320 < th dose independent rect. 4 1
738 117.91 humidity 50.0 30 > th dose independent rect. 5 23
743 117.93 wind 1.0 30 > th dose independent rect. 17 14
744 117.93 wind 1.0 90 > th dose independent rect. 15 16
760 117.97 humidity 90.0 720 < th dose independent rect. 4 3
761 117.97 radiation 10.0 10 < th dose independent rect. 4 3
776 118.01 humidity 90.0 10 < th dose dependent rect. 2 5
792 118.06 wind 1.0 90 > th dose independent rect. 1 6
806 118.09 humidity 90.0 720 > th dose independent rect. 3 3
809 118.10 humidity 90.0 720 > th dose independent rect. 1 5
818 118.11 humidity 50.0 90 > th dose independent rect. 7 12
823 118.11 humidity 50.0 30 > th dose dependent rect. 7 23
826 118.12 humidity 60.0 30 < th dose independent rect. 17 17
854 118.15 temperature 30.0 10 > th dose dependent sin 9 NA
857 118.15 wind 9.0 30 < th dose dependent rect. 7 23
873 118.17 radiation 10.0 10 < th dose independent rect. 17 14
878 118.18 wind 9.0 4320 < th dose independent rect. 5 3
882 118.18 humidity 50.0 90 > th dose independent rect. 7 10
900 118.20 wind 1.0 10 > th dose independent rect. 7 10
904 118.20 humidity 50.0 720 > th dose dependent rect. 23 10
912 118.22 radiation 1.0 30 > th dose independent rect. 7 10
921 118.23 radiation 10.0 10 < th dose independent rect. 6 6
922 118.23 humidity 90.0 10 < th dose independent rect. 17 14
943 118.25 temperature 10.0 90 > th dose dependent rect. 7 20
948 118.26 radiation 30.0 90 < th dose independent rect. 11 20
949 118.26 humidity 60.0 720 > th dose dependent rect. 7 1
953 118.27 wind 1.0 90 > th dose independent rect. 11 20
959 118.28 temperature 30.0 10 > th dose independent rect. 16 20
960 118.28 temperature 30.0 10 > th dose dependent rect. 11 2
976 118.30 temperature 25.0 10 > th dose independent rect. 17 14
984 118.31 temperature 10.0 1440 > th dose independent rect. 5 3
987 118.31 temperature 30.0 1440 < th dose independent rect. 5 3
991 118.31 humidity 50.0 1440 > th dose independent rect. 5 3
996 118.31 atmosphere 995.0 1440 > th dose independent rect. 5 3
997 118.31 atmosphere 1015.0 1440 < th dose independent rect. 5 3
999 118.31 temperature 10.0 1440 > th dose independent rect. 8 21