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Os07g0659400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haloacid dehalogenase/epoxide hydrolase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0293) R2 : 0.947
β1 : -0.629 (0.107) R2dD : 0.00417 R2D : -9.25e-05
β2 : 6.96 (0.0788) R2dC : 1.04 R2C : 0.657
β3 : 4.74 (0.106) R2dE : 0.267 R2E : -0.104
β4 : 2.53 (0.309) R2dD*C : 0.00769 R2D*C : 0.00719
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.215 (0.0626) R2dN8 : 0.00188 R2N8 : -0.00353
σ : 0.545
deviance : 137.17
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C
peak time of C : 8.41
E
wheather : temperature
threshold : 35.92
memory length : 297
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 10.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
136.83 0.55 11.6 -0.655 6.99 4.75 2.81 0.639 -0.221 8.35 35.22 299 17 10.5
137.17 0.545 11.6 -0.629 6.96 4.74 2.53 -- -0.215 8.41 35.92 297 17.1 10.6
159.38 0.588 11.6 -0.53 7 4.93 -- 0.399 -0.198 8.41 35.75 297 17.1 10.5
156.52 0.583 11.6 -0.548 7 4.98 -- -- -0.22 8.49 36.11 297 17 10.6
264.57 0.758 11.9 -1.01 -- 7.18 -- 0.803 -0.351 -- 97.86 887 18.8 8.45
239.96 0.726 11.7 -0.951 6.65 -- 3.03 -- -0.567 6.69 -- -- -- --
262.98 0.759 11.8 -0.905 6.66 -- -- -- -0.577 6.66 -- -- -- --
230.06 0.706 11.9 -0.639 -- 7.64 -- -- -0.38 -- 125.1 828 18.8 9.95
163.6 0.596 11.6 -- 7.04 5.19 -- -- -0.11 8.55 35.78 296 17 10.6
2576.2 2.37 11.9 -0.749 -- -- -- -- -0.443 -- -- -- -- --
284.57 0.789 11.7 -- 6.65 -- -- -- -0.476 6.66 -- -- -- --
242 0.725 11.9 -- -- 7.78 -- -- -0.362 -- 115.1 838 18.7 10
2590.97 2.38 11.9 -- -- -- -- -- -0.36 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.17 temperature 30 270 < th dose dependent rect. 17 10
2 144.54 temperature 30 90 < th dose dependent rect. 19 10
11 155.66 temperature 10 270 > th dose dependent rect. 14 10
26 159.54 temperature 30 270 < th dose dependent sin 15 NA
45 162.68 temperature 30 270 < th dose dependent rect. 11 16
55 163.80 temperature 25 270 > th dose independent rect. 14 10
77 165.48 temperature 30 720 < th dose dependent rect. 17 3
89 166.08 temperature 15 270 > th dose dependent rect. 16 16
123 167.53 temperature 30 720 < th dose dependent rect. 19 1
136 168.01 temperature 10 270 > th dose dependent sin 14 NA
141 168.30 temperature 10 90 > th dose dependent sin 12 NA
155 168.74 temperature 10 10 > th dose dependent sin 11 NA
192 170.05 temperature 20 10 > th dose dependent rect. 16 10
214 170.67 temperature 25 270 < th dose independent rect. 17 10
251 171.50 temperature 25 720 < th dose independent rect. 17 2
256 171.55 temperature 30 720 < th dose dependent rect. 10 12
263 171.74 temperature 25 720 < th dose independent rect. 16 4
265 171.79 temperature 15 10 > th dose dependent rect. 16 18
268 171.95 temperature 20 10 > th dose independent rect. 16 18
325 173.16 temperature 20 10 > th dose independent rect. 16 10
391 174.63 temperature 25 10 < th dose dependent rect. 14 14
460 175.80 temperature 25 10 < th dose dependent rect. 12 16
522 176.98 temperature 25 270 < th dose independent sin 16 NA
542 177.29 temperature 25 270 < th dose dependent rect. 21 1
599 178.39 radiation 1 720 < th dose dependent rect. 17 12
630 178.85 temperature 10 720 > th dose dependent rect. 13 6
632 178.88 temperature 25 720 < th dose independent rect. 10 12
664 179.42 temperature 15 10 > th dose dependent rect. 18 16
882 182.44 radiation 1 720 < th dose dependent sin 13 NA
926 183.25 radiation 1 720 > th dose independent sin 14 NA
936 183.40 temperature 20 270 > th dose independent rect. 14 18