BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0659400 Os07g0659400|Os07g0659400
(304 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41250.1 | chr2:17200862-17202551 REVERSE LENGTH=291 329 1e-90
AT1G14310.1 | chr1:4885049-4886672 FORWARD LENGTH=255 185 3e-47
>AT2G41250.1 | chr2:17200862-17202551 REVERSE LENGTH=291
Length = 290
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 157/225 (69%), Positives = 185/225 (82%)
Query: 54 REYYDYRRAIYGDITHKAILVDAAGTLLAPTEPMAQVYRTIGEKYGVNYSEDEILMRYRR 113
+EY DYRR++YG+ITHKA+LVDA GTLL P +P AQ+Y+ IGEKYGV YSE EIL RYRR
Sbjct: 62 KEYEDYRRSLYGEITHKALLVDAVGTLLVPAQPTAQIYKNIGEKYGVEYSEAEILTRYRR 121
Query: 114 AYAQPWGRSRLRYVDDGRPFWQHIVSSSTGCSDLQYFEELYQYYTTAKAWQLCDPDAKYV 173
AY +PWG S LRYV+D RPFWQ+IV++STGCSD QYFEELY Y+TT +AW+LCDPDA V
Sbjct: 122 AYQKPWGGSHLRYVNDARPFWQYIVTASTGCSDSQYFEELYSYFTTEQAWKLCDPDAGKV 181
Query: 174 FEALRKAGVKTAVVSNFDTRLRPLLQALNCDHWFDXXXXXXXXXXXKPNPTIFLKACEFL 233
F+A+++AGVK A+VSNFDTRLRPLL+AL C+ WFD KPNPTIFLKACE L
Sbjct: 182 FKAIKEAGVKVAIVSNFDTRLRPLLRALRCEDWFDAVAVSAEVEAEKPNPTIFLKACELL 241
Query: 234 GVKPEEAVHIGDDRRNDLWGARDAGCDAWLWGSDVYSFKENQAHI 278
V PE+AVH+GDDRRND+WGARDAGCDAWLWGS+V SFK+ I
Sbjct: 242 EVNPEDAVHVGDDRRNDVWGARDAGCDAWLWGSEVTSFKQVAQRI 286
>AT1G14310.1 | chr1:4885049-4886672 FORWARD LENGTH=255
Length = 254
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 128/216 (59%), Gaps = 4/216 (1%)
Query: 69 HKAILVDAAGTLLAPTEPMAQVYRTIGEKYGVNYSEDEILMRYRRAYAQPWGRSRLRYVD 128
+ +L+DA GTLL ++P+ + Y ++G+KYG+ + EI ++R ++ PW +LRY
Sbjct: 42 YDGLLLDAGGTLLQLSKPVHETYASLGQKYGLKTTPAEIKEGFKRVFSAPW-PEKLRYQG 100
Query: 129 DGRPFWQHIVSSSTGCSDLQYFEELYQYYTTAKAWQLCDPDAKY-VFEALRKAGVKTAVV 187
DGRPFW+ +VS +TGCSD YFE++YQYY +AW L P+ Y L+ AGVK AVV
Sbjct: 101 DGRPFWKLVVSEATGCSDNDYFEDVYQYYANGEAWHL--PEGAYETMSLLKDAGVKMAVV 158
Query: 188 SNFDTRLRPLLQALNCDHWFDXXXXXXXXXXXKPNPTIFLKACEFLGVKPEEAVHIGDDR 247
SNFDTRLR LL+ LN FD KP+ IF A E + V AVH+GDD
Sbjct: 159 SNFDTRLRKLLKDLNVIDMFDAVIVSAEVGYEKPDERIFKSALEQISVDVNRAVHVGDDE 218
Query: 248 RNDLWGARDAGCDAWLWGSDVYSFKENQAHIIKSGL 283
D GA G WLWG DV +F + Q I+ S L
Sbjct: 219 GADKGGANAIGIACWLWGEDVQTFSDIQKRILVSEL 254
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,935,493
Number of extensions: 236590
Number of successful extensions: 436
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 206
Effective length of database: 8,419,801
Effective search space: 1734479006
Effective search space used: 1734479006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)