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Os07g0656500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Mg-chelatase subunit chlH (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.2 (0.0256) R2 : 0.882
β1 : -0.88 (0.0949) R2dD : 0.0239 R2D : 0.0139
β2 : 1.95 (0.119) R2dC : 0.255 R2C : 0.6
β3 : -2.12 (0.155) R2dE : 0.18 R2E : 0.559
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.756 (0.0556) R2dN8 : 0.0671 R2N8 : 0.0526
σ : 0.478
deviance : 105.46
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C
peak time of C : 9.83
E
wheather : temperature
threshold : 16.3
memory length : 306
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.7
open length of G : 8.87

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.24 0.456 14.2 -0.523 2.04 -2.08 1.2 4.4 -0.659 9.53 16.17 275 16 9.83
103.08 0.473 14.2 -0.88 2.01 -2.09 -0.781 -- -0.748 9.83 16.69 305 15.8 8.85
96.37 0.457 14.2 -0.423 2.28 -1.88 -- 3.77 -0.635 9.6 18 276 16 9.9
105.46 0.478 14.2 -0.88 1.95 -2.12 -- -- -0.756 9.83 16.3 306 15.7 8.87
139.78 0.551 14.3 -0.846 -- -3.48 -- 1.49 -0.725 -- 7.099 153 16.3 10.4
147.36 0.569 14.2 -1.08 3.34 -- -0.303 -- -0.902 9.84 -- -- -- --
147.72 0.569 14.2 -1.09 3.34 -- -- -- -0.902 9.83 -- -- -- --
125.96 0.523 14.3 -0.935 -- -4.19 -- -- -0.7 -- 9.354 282 15.3 10.3
125.2 0.521 14.2 -- 1.93 -2.15 -- -- -0.65 9.58 16.29 294 15.8 9.81
814 1.33 14.3 -1.13 -- -- -- -- -0.901 -- -- -- -- --
179.19 0.626 14.2 -- 3.34 -- -- -- -0.781 9.86 -- -- -- --
131.23 0.534 14.3 -- -- -3.88 -- -- -0.688 -- 8.248 369 14.4 10.3
847.54 1.36 14.3 -- -- -- -- -- -0.775 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.02 temperature 15 270 > th dose dependent rect. 16 10
45 105.97 temperature 25 270 > th dose independent rect. 16 5
49 106.17 temperature 15 270 > th dose dependent rect. 16 18
52 106.36 temperature 15 10 > th dose dependent rect. 17 10
135 110.93 temperature 30 270 < th dose dependent rect. 12 16
150 111.39 temperature 15 270 > th dose dependent sin 15 NA
215 112.78 temperature 20 90 > th dose independent rect. 17 10
295 114.33 temperature 20 720 > th dose dependent sin 18 NA
338 115.14 temperature 30 270 < th dose dependent sin 16 NA
398 116.02 temperature 25 10 < th dose dependent rect. 14 14
408 116.10 temperature 25 10 < th dose dependent rect. 12 16
419 116.19 temperature 25 10 < th dose dependent sin 15 NA
440 116.33 temperature 30 720 < th dose dependent rect. 11 9
462 116.48 temperature 20 720 > th dose dependent rect. 9 17
477 116.63 temperature 30 720 < th dose dependent rect. 10 11
499 116.81 temperature 10 720 > th dose dependent rect. 9 17
631 117.99 temperature 30 720 < th dose dependent sin 21 NA
633 117.99 temperature 15 10 > th dose dependent rect. 17 19
645 118.11 temperature 25 10 > th dose independent rect. 18 5
694 118.54 temperature 25 270 > th dose independent rect. 16 17
728 118.77 radiation 1 720 < th dose dependent rect. 16 8