Os07g0656400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0656400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.1 | 0.396 | 6.3 | 2.06 | 0.722 | -1.19 | -0.216 | 4.9 | 0.303 | 10.4 | 23.74 | 1263 | -- | -- |
| 83.65 | 0.426 | 6.43 | 0.9 | 0.764 | -0.768 | -0.389 | -- | 0.0637 | 11 | 20.51 | 7901 | -- | -- |
| 71.26 | 0.393 | 6.3 | 2.04 | 0.713 | -1.18 | -- | 4.83 | 0.308 | 10.4 | 23.53 | 1243 | -- | -- |
| 83.41 | 0.425 | 6.42 | 1 | 0.798 | -0.958 | -- | -- | 0.116 | 10.6 | 15.74 | 8499 | -- | -- |
| 91.98 | 0.447 | 6.33 | 1.92 | -- | -1.51 | -- | 4.81 | 0.308 | -- | 23.26 | 981 | -- | -- |
| 100.75 | 0.471 | 6.49 | 0.482 | 0.823 | -- | -0.4 | -- | -0.193 | 10.8 | -- | -- | -- | -- |
| 101.42 | 0.472 | 6.49 | 0.465 | 0.825 | -- | -- | -- | -0.194 | 10.8 | -- | -- | -- | -- |
| 106.52 | 0.481 | 6.52 | 0.747 | -- | -1.06 | -- | -- | -0.122 | -- | 23.8 | 914 | -- | -- |
| 97.62 | 0.46 | 6.49 | -- | 0.83 | -0.481 | -- | -- | -0.0951 | 10.9 | 26.31 | 8346 | -- | -- |
| 143.62 | 0.56 | 6.51 | 0.448 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 107.12 | 0.484 | 6.5 | -- | 0.822 | -- | -- | -- | -0.246 | 10.8 | -- | -- | -- | -- |
| 119.78 | 0.51 | 6.5 | -- | -- | -0.97 | -- | -- | -0.141 | -- | 23.57 | 909 | -- | -- |
| 148.91 | 0.57 | 6.52 | -- | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 4 | 70.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 21 | 71.18 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 51 | 71.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 219 | 73.04 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 259 | 73.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 292 | 73.68 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 306 | 73.78 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 405 | 74.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 414 | 74.46 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 435 | 74.59 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 471 | 74.85 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 473 | 74.88 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 501 | 75.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 511 | 75.13 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 518 | 75.16 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 520 | 75.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 526 | 75.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 529 | 75.23 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 599 | 75.57 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 651 | 75.70 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 657 | 75.71 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 674 | 75.74 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 685 | 75.77 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 687 | 75.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 19 |
| 715 | 75.81 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 729 | 75.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 747 | 75.86 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 749 | 75.87 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 753 | 75.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 757 | 75.88 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 761 | 75.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 765 | 75.88 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 22 |
| 766 | 75.89 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 774 | 75.90 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 783 | 75.90 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 19 |
| 829 | 75.96 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 832 | 75.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 836 | 75.97 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 850 | 75.99 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 851 | 75.99 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 857 | 76.00 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 884 | 76.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 900 | 76.06 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 906 | 76.07 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 912 | 76.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 947 | 76.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 950 | 76.12 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 962 | 76.13 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 977 | 76.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 988 | 76.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 990 | 76.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 996 | 76.16 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 1000 | 76.16 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 17 |