BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0656400 Os07g0656400|011-061-F11
(530 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41770.1 | chr2:17424549-17427042 REVERSE LENGTH=772 590 e-169
AT3G57420.1 | chr3:21252605-21255115 REVERSE LENGTH=766 580 e-166
>AT2G41770.1 | chr2:17424549-17427042 REVERSE LENGTH=772
Length = 771
Score = 590 bits (1521), Expect = e-169, Method: Compositional matrix adjust.
Identities = 275/438 (62%), Positives = 340/438 (77%), Gaps = 6/438 (1%)
Query: 96 VPGWQLLAVADETTPPDWSHPGAALLTLADQARLGFRSVAFLPARGHARKAAAYLFAVQR 155
+ GWQ+LA+ + TP DWS G+ L+L QA LG+R + LP RK+ YLFA+Q
Sbjct: 137 IRGWQVLAIGNSATPKDWSLKGSIFLSLDAQAELGYRVLDHLPYDSFVRKSVGYLFAIQH 196
Query: 156 GARVIYDADARNAVLGSNLTKHFDVDL---DHRQGGGVLLQYSHADPNRTVVNPYVHFGQ 212
GA+ IYDAD R V+ +L KHFDV+L D +Q +LQYSH +PNRTVVNPY+HFGQ
Sbjct: 197 GAKKIYDADDRGEVIDGDLGKHFDVELVGLDSKQEP--ILQYSHENPNRTVVNPYIHFGQ 254
Query: 213 PSVWPRGLPLHKAGEVGVEEFYTXXXXXXXXXXXXLCNGLPDVDAVFYFTRKSSEMEAFD 272
SVWPRGLPL GE+ EE+YT + NGLPDVD+VFYFTRK++ +EAFD
Sbjct: 255 RSVWPRGLPLENVGEINHEEYYTEVFGGKQFIQQGISNGLPDVDSVFYFTRKTT-LEAFD 313
Query: 273 LRFDADAPKVALPQGMMAPINSVNTLFHSPAFWGLALPVSVSPMAADVIRGYWSQRILWE 332
+RFD +PKVALPQG+M P+NS NTL+HS AFWGL LPVSVS MA+DV+RGYW QR+LWE
Sbjct: 314 IRFDEHSPKVALPQGVMVPVNSFNTLYHSSAFWGLMLPVSVSSMASDVLRGYWGQRLLWE 373
Query: 333 IGGYLVVYPPTVHRMDNVHAHPFDDEKDIHVSVGRLIDFLMEWRSHKQTLFERILDLSYA 392
+GGY+ VYPPT HR D + A+PF +EKD+HV+VGRLI FL+ WRS K + FE +LDLS+A
Sbjct: 374 LGGYVAVYPPTAHRFDRIEAYPFVEEKDLHVNVGRLIKFLLAWRSEKHSFFETVLDLSFA 433
Query: 393 MTEEGFWGEKDLQFMSAWLQDLVSVGYRQPRLMSLEIDRPRATIGHGDKQVFVPKKLPTV 452
M EEGFW E+DL+F +AWLQDL++VGY+QPRLMSLE+DRPRA+IGHGD++ FVP+KLP+V
Sbjct: 434 MAEEGFWTEQDLKFTAAWLQDLIAVGYQQPRLMSLELDRPRASIGHGDRKEFVPRKLPSV 493
Query: 453 HLGVEEIGEVSTEIGNLIKWRKHFGDVVLIVHCTVPVDRVALEWRLLYGRIFRAVVILSE 512
HLGVEE G VSTEIGNLI+WRK+FG+VVL++ C PV+R ALEWRLLYGRIF+ VVILS
Sbjct: 494 HLGVEETGTVSTEIGNLIRWRKNFGNVVLVMFCNGPVERTALEWRLLYGRIFKTVVILSS 553
Query: 513 KSNSDLAVEVSNLAQAYK 530
+ NSDL VE + L YK
Sbjct: 554 QKNSDLYVEEAKLDHIYK 571
>AT3G57420.1 | chr3:21252605-21255115 REVERSE LENGTH=766
Length = 765
Score = 580 bits (1494), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/438 (62%), Positives = 335/438 (76%), Gaps = 6/438 (1%)
Query: 96 VPGWQLLAVADETTPPDWSHPGAALLTLADQARLGFRSVAFLPARGHARKAAAYLFAVQR 155
+ GWQ+LA+ + TP DW+ GA L+L QA L +R + LP RK+ YLFA+Q
Sbjct: 130 IKGWQVLAIGNSLTPKDWNLKGAIFLSLDAQAELNYRILDHLPYDSFVRKSVGYLFAIQH 189
Query: 156 GARVIYDADARNAVLGSNLTKHFDVDL---DHRQGGGVLLQYSHADPNRTVVNPYVHFGQ 212
GA+ I+DAD R V+ +L KHFDV+L D RQ +LQYSH +PNRTVVNPY+HFGQ
Sbjct: 190 GAKKIFDADDRGEVIDGDLGKHFDVELVGEDARQEP--ILQYSHENPNRTVVNPYIHFGQ 247
Query: 213 PSVWPRGLPLHKAGEVGVEEFYTXXXXXXXXXXXXLCNGLPDVDAVFYFTRKSSEMEAFD 272
SVWPRGLPL GE+ EE+YT + NGLPDVD+V+Y TRK++ E FD
Sbjct: 248 RSVWPRGLPLENVGEINHEEYYTEVFGGKQFIQQGISNGLPDVDSVYYSTRKTT-FEPFD 306
Query: 273 LRFDADAPKVALPQGMMAPINSVNTLFHSPAFWGLALPVSVSPMAADVIRGYWSQRILWE 332
+RFD +PKVALPQGMM P+NS NTL+HS AFWGL LPVSVS MA+DVIRGYW QR+LWE
Sbjct: 307 IRFDEHSPKVALPQGMMVPVNSFNTLYHSSAFWGLMLPVSVSSMASDVIRGYWGQRLLWE 366
Query: 333 IGGYLVVYPPTVHRMDNVHAHPFDDEKDIHVSVGRLIDFLMEWRSHKQTLFERILDLSYA 392
+GGY+ VYPPTVHR D V A+PF DEKD+H++VGRLI FL+ WRS+K FE ILDLS+
Sbjct: 367 LGGYVAVYPPTVHRYDRVEAYPFSDEKDLHINVGRLIKFLLAWRSNKHRFFETILDLSFV 426
Query: 393 MTEEGFWGEKDLQFMSAWLQDLVSVGYRQPRLMSLEIDRPRATIGHGDKQVFVPKKLPTV 452
M E+GFW E D++F +AWLQDL+ VGY+QPRLMSLE+DRPRATIGHGD++ FVP+KLP+V
Sbjct: 427 MAEQGFWTELDVKFTAAWLQDLLMVGYQQPRLMSLELDRPRATIGHGDRKEFVPRKLPSV 486
Query: 453 HLGVEEIGEVSTEIGNLIKWRKHFGDVVLIVHCTVPVDRVALEWRLLYGRIFRAVVILSE 512
HLGVEEIG VS+EIGNLIKWRK+FG+VVLI+ C PV+R ALEWRLLYGRIF+ VVILS
Sbjct: 487 HLGVEEIGTVSSEIGNLIKWRKNFGNVVLIMFCNGPVERTALEWRLLYGRIFKTVVILSS 546
Query: 513 KSNSDLAVEVSNLAQAYK 530
+ NSDL V+ + L YK
Sbjct: 547 RKNSDLYVQEAKLDHIYK 564
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,894,001
Number of extensions: 407516
Number of successful extensions: 668
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 2
Length of query: 530
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 427
Effective length of database: 8,282,721
Effective search space: 3536721867
Effective search space used: 3536721867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)