Os07g0653900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0653900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.35 | 0.691 | 4.06 | 0.667 | 0.949 | 9.59 | -0.392 | 23.2 | 0.346 | 0.286 | 0.7809 | 1940 | 13 | 0.967 |
| 257.73 | 0.753 | 3.75 | -0.344 | 0.974 | 1.91 | -0.498 | -- | 0.291 | 0.383 | 7.167e-05 | 699 | 13.3 | 1.88 |
| 216.94 | 0.686 | 4.06 | 0.693 | 0.945 | 9.63 | -- | 23.2 | 0.349 | 0.296 | 0.8765 | 1911 | 13.1 | 0.987 |
| 228.81 | 0.705 | 3.72 | 0.04 | 0.933 | 2.12 | -- | -- | 0.405 | 0.474 | 0.0004624 | 1053 | 13.1 | 2 |
| 272.87 | 0.769 | 4.05 | 0.723 | -- | 9.69 | -- | 23.3 | 0.35 | -- | 0.8881 | 1863 | 13.3 | 1.03 |
| 261.31 | 0.758 | 3.75 | -0.367 | 0.961 | -- | -0.438 | -- | 0.284 | 0.344 | -- | -- | -- | -- |
| 262.14 | 0.758 | 3.75 | -0.35 | 0.962 | -- | -- | -- | 0.286 | 0.344 | -- | -- | -- | -- |
| 276.53 | 0.774 | 3.72 | 0.0809 | -- | 2.3 | -- | -- | 0.396 | -- | 0.5374 | 1053 | 13.1 | 1.98 |
| 228.59 | 0.704 | 3.71 | -- | 0.885 | 2.07 | -- | -- | 0.408 | 0.488 | 0.1847 | 1053 | 13.1 | 1.98 |
| 320.35 | 0.836 | 3.73 | -0.317 | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
| 265.36 | 0.762 | 3.74 | -- | 0.957 | -- | -- | -- | 0.325 | 0.325 | -- | -- | -- | -- |
| 276.62 | 0.775 | 3.71 | -- | -- | 2.26 | -- | -- | 0.412 | -- | 0.5786 | 1051 | 13.1 | 1.97 |
| 323.01 | 0.839 | 3.72 | -- | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 2 | 216.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 3 | 216.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 4 | 216.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 5 | 216.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 70 | 226.24 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 78 | 228.13 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 82 | 228.40 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 83 | 228.52 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 94 | 229.76 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 109 | 230.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 116 | 230.90 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 129 | 231.50 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 138 | 231.94 | wind | 7 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 149 | 232.54 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 151 | 232.54 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 153 | 232.54 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 205 | 232.54 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 209 | 232.54 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 260 | 232.62 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 277 | 233.19 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 281 | 233.22 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 285 | 233.25 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 307 | 233.79 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 321 | 234.23 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 339 | 234.67 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 356 | 235.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 360 | 235.08 | wind | 1 | 720 | < th | dose independent | rect. | 23 | 1 |
| 383 | 235.32 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 1 | 5 |
| 437 | 235.66 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 439 | 235.68 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 444 | 235.69 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 451 | 235.71 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 478 | 235.88 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 23 | 4 |
| 506 | 236.13 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 22 | 6 |
| 508 | 236.13 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 523 | 236.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 543 | 236.58 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 547 | 236.63 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 551 | 236.68 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 16 |
| 556 | 236.71 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 560 | 236.76 | wind | 7 | 720 | > th | dose independent | rect. | 15 | 14 |
| 576 | 236.79 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 580 | 236.82 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 588 | 236.86 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 13 |
| 632 | 237.05 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 660 | 237.15 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 674 | 237.18 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 694 | 237.24 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 695 | 237.25 | atmosphere | 995 | 43200 | > th | dose independent | sin | 4 | NA |
| 704 | 237.27 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 726 | 237.37 | atmosphere | 995 | 43200 | < th | dose independent | sin | 4 | NA |
| 753 | 237.45 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 16 |
| 759 | 237.46 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 10 | 17 |
| 774 | 237.54 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 19 |
| 792 | 237.63 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 825 | 237.74 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 24 | 15 |
| 832 | 237.75 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 10 | 22 |
| 840 | 237.76 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 9 | 20 |
| 845 | 237.77 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 849 | 237.77 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 9 |
| 916 | 237.89 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 923 | 237.91 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 933 | 237.93 | wind | 5 | 720 | > th | dose independent | rect. | 21 | 1 |
| 981 | 238.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 993 | 238.02 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |