BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0653900 Os07g0653900|J043027I23
(166 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14280.1 | chr4:8222518-8225074 FORWARD LENGTH=799 62 2e-10
AT5G18980.1 | chr5:6334944-6337943 REVERSE LENGTH=836 59 9e-10
AT3G06210.1 | chr3:1880093-1883317 FORWARD LENGTH=841 59 1e-09
>AT4G14280.1 | chr4:8222518-8225074 FORWARD LENGTH=799
Length = 798
Score = 62.0 bits (149), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 39 EVLIGLSSQICHVV--PEDFARELEHYQI-KERFVKKLVEALNANVKPTAHCPRIRRVIV 95
EV++GL+ I ++ PE+ E + +E K L+ L +P PRIRR +
Sbjct: 672 EVMVGLAPHILKLMNTPEELRGMFEEAGVTEEELAKALINILKRYEQPVPKVPRIRRFAI 731
Query: 96 EQVIYMMENNCSYANCFNECQMMEALTVVEETPSKVEKYRLFMGDAGLMEYSMPLSNLVA 155
E I MM+ N F +M L V ET +++E + +F G GL + ++ L+
Sbjct: 732 ELTIAMMKANVETVKTFQNLEMKNELETVFETAAELENFDIFSGTVGLARHGSTINELIE 791
Query: 156 RA 157
A
Sbjct: 792 EA 793
>AT5G18980.1 | chr5:6334944-6337943 REVERSE LENGTH=836
Length = 835
Score = 59.3 bits (142), Expect = 9e-10, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 39 EVLIGLSSQICHVVPEDFARELEHYQ--IKERFVKKLVEALNANVKPTAHCPRIRRVIVE 96
EV++GL++Q+ + + + Y ++ LV L N KP PRIRR ++E
Sbjct: 707 EVMVGLAAQVFRFMSSKESSYVFMYSGIKRQELANSLVSILKKNDKPAIKVPRIRRFVIE 766
Query: 97 QVIYMMENNCSYANC--FNECQMMEALTVVEETPSKVEKYRLFMGDAGLMEYSMPLSNLV 154
I+MME++ N F E + + L V ET +++E + +F G GL +S + +L
Sbjct: 767 LAIWMMEDDELEDNVALFREMGLEKELEKVLETTAELENFDVFSGTVGLSRHSRTVHSLA 826
Query: 155 ARAKEEL 161
A E L
Sbjct: 827 ELALEIL 833
>AT3G06210.1 | chr3:1880093-1883317 FORWARD LENGTH=841
Length = 840
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 38 LEVLIGLSSQICHVVPEDFAR-ELEHYQIKER-FVKKLVEALNANVKPTAHCPRIRRVIV 95
LEV++GL++Q+ + + A L IK++ LV L + KP PRIRR ++
Sbjct: 710 LEVMLGLAAQVFKFMSSEEANIVLTDSGIKKQELANSLVSILKKHDKPAIKVPRIRRFVI 769
Query: 96 EQVIYMMENNCSYANCFNECQMMEALTVVEETPSKVEKYRLFMGDAGLMEYS 147
E I+MME++ F + M + L V ET +++E + +F G G+ S
Sbjct: 770 ELAIWMMEDDVENVGMFRDLGMEKELVKVLETTAELENFDVFSGTVGVSRQS 821
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,463,670
Number of extensions: 126015
Number of successful extensions: 320
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)