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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0649600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.028) R2 : 0.248
β1 : -0.316 (0.103) R2dD : 0.0158 R2D : 0.0242
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.03 (0.334) R2dE : 0.0568 R2E : 0.0821
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.55 (0.996) R2dD*E : 0.143 R2D*E : 0.174
γ1 : -0.0248 (0.06) R2dN8 : 0.00036 R2N8 : 0.000198
σ : 0.527
deviance : 126.53
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.2
memory length : 15
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.88
open length of G : 1.56

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126.51 0.528 2.95 -0.317 0.0475 1.93 0.0572 -9.24 -0.026 5.75 23.2 15 7.88 1.56
149.26 0.569 2.96 -0.372 0.0962 2.21 -0.388 -- -0.0467 5.92 23.13 24 7.61 2
126.41 0.528 2.95 -0.317 0.0481 2 -- -9.54 -0.0262 6.25 23.2 15 7.88 1.56
148.25 0.567 2.96 -0.383 0.0457 2.37 -- -- -0.0452 5.12 22.9 47 7.18 1.87
126.53 0.527 2.96 -0.316 -- 2.03 -- -9.55 -0.0248 -- 23.2 15 7.88 1.56
161.54 0.596 2.97 -0.402 0.127 -- -0.762 -- -0.0727 7.26 -- -- -- --
163.1 0.598 2.97 -0.419 0.126 -- -- -- -0.0713 7.03 -- -- -- --
148.37 0.567 2.96 -0.38 -- 2.4 -- -- -0.04 -- 22.9 49 7.16 1.9
152.09 0.574 2.95 -- 0.0443 2.44 -- -- 0.00139 6.53 22.89 47 7.22 1.82
163.93 0.598 2.97 -0.416 -- -- -- -- -0.069 -- -- -- -- --
167.72 0.606 2.96 -- 0.122 -- -- -- -0.0247 7.24 -- -- -- --
152.19 0.575 2.95 -- -- 2.46 -- -- 0.00256 -- 22.9 47 7.18 1.88
168.51 0.606 2.96 -- -- -- -- -- -0.0228 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 131.47 temperature 25 10 < th dose dependent rect. 8 1
11 132.77 humidity 70 10 < th dose dependent rect. 19 13
13 132.80 humidity 70 10 < th dose independent rect. 19 13
14 132.80 humidity 70 90 < th dose independent rect. 18 14
33 133.82 radiation 30 30 > th dose dependent rect. 7 2
115 133.89 radiation 30 30 > th dose independent rect. 7 1
131 133.89 humidity 80 90 < th dose dependent rect. 6 1
132 133.90 humidity 80 90 < th dose independent rect. 6 1
133 133.91 humidity 70 10 < th dose independent rect. 7 1
208 133.91 humidity 70 10 < th dose dependent rect. 7 1
643 138.82 temperature 20 90 < th dose independent rect. 6 1
664 139.23 wind 3 10 > th dose independent rect. 7 1
740 141.46 atmosphere 1005 30 > th dose dependent rect. 7 1
816 143.29 temperature 25 90 < th dose dependent rect. 6 5
840 144.00 temperature 25 10 < th dose independent rect. 7 1
891 145.26 temperature 20 270 < th dose dependent rect. 4 1
904 145.55 radiation 1 270 > th dose independent rect. 4 1
950 146.15 radiation 30 30 < th dose independent sin 11 NA
955 146.35 humidity 90 90 > th dose dependent rect. 6 16
959 146.44 wind 1 10 > th dose dependent rect. 7 1
967 146.62 humidity 70 10 < th dose independent sin 11 NA