Os07g0647500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0647500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.58 | 0.251 | 12.4 | -1.18 | 0.416 | 0.16 | 0.265 | -1.29 | -0.13 | 0.323 | 20.1 | 2035 | -- | -- |
| 29.83 | 0.254 | 12.4 | -1.07 | 0.415 | 0.59 | 0.21 | -- | -0.108 | 0.179 | 18.5 | 2904 | -- | -- |
| 28.67 | 0.249 | 12.4 | -1.14 | 0.428 | 0.186 | -- | -1.36 | -0.118 | 0.328 | 19.39 | 1625 | -- | -- |
| 29.96 | 0.255 | 12.4 | -1.07 | 0.418 | 0.588 | -- | -- | -0.108 | 0.184 | 18.49 | 2963 | -- | -- |
| 39.13 | 0.291 | 12.4 | -1.18 | -- | 0.262 | -- | -1.1 | -0.136 | -- | 19.7 | 2343 | -- | -- |
| 34.22 | 0.274 | 12.3 | -0.795 | 0.423 | -- | 0.183 | -- | -0.00248 | 0.346 | -- | -- | -- | -- |
| 34.37 | 0.275 | 12.3 | -0.802 | 0.422 | -- | -- | -- | -0.00337 | 0.351 | -- | -- | -- | -- |
| 39.75 | 0.294 | 12.3 | -1.07 | -- | 0.631 | -- | -- | -0.116 | -- | 18.4 | 2381 | -- | -- |
| 42.59 | 0.304 | 12.3 | -- | 0.426 | -0.507 | -- | -- | 0.212 | 0.311 | 18.6 | 47520 | -- | -- |
| 45.57 | 0.315 | 12.3 | -0.788 | -- | -- | -- | -- | 0.00335 | -- | -- | -- | -- | -- |
| 51.33 | 0.335 | 12.3 | -- | 0.411 | -- | -- | -- | 0.086 | 0.249 | -- | -- | -- | -- |
| 53.41 | 0.34 | 12.3 | -- | -- | -0.428 | -- | -- | 0.238 | -- | 21.8 | 47520 | -- | -- |
| 61.96 | 0.367 | 12.3 | -- | -- | -- | -- | -- | 0.0908 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.92 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 2 | 26.97 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 4 | 27.03 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 5 | 27.05 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 6 | 27.07 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 12 | 27.17 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 13 | 27.17 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 14 | 27.19 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 23 | 27.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 24 | 27.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 26 | 27.29 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 38 | 27.37 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 40 | 27.37 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 42 | 27.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 46 | 27.40 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 50 | 27.42 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 74 | 27.47 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 116 | 27.58 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 17 |
| 124 | 27.60 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 138 | 27.63 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 14 |
| 166 | 27.69 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 188 | 27.74 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 11 |
| 202 | 27.77 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 222 | 27.80 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 238 | 27.82 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 18 |
| 247 | 27.84 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 265 | 27.86 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 271 | 27.87 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 291 | 27.90 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 12 |
| 296 | 27.91 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 302 | 27.92 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 341 | 27.96 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 379 | 27.99 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 382 | 27.99 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 400 | 28.00 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 18 |
| 417 | 28.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 431 | 28.02 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 437 | 28.03 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 446 | 28.03 | humidity | 80.0 | 14400 | > th | dose dependent | no | NA | NA |
| 454 | 28.04 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 468 | 28.04 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 483 | 28.06 | humidity | 90.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 504 | 28.07 | temperature | 20.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 505 | 28.07 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 516 | 28.07 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 520 | 28.08 | temperature | 20.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 521 | 28.08 | humidity | 90.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 523 | 28.08 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 538 | 28.08 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 542 | 28.09 | humidity | 80.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 565 | 28.10 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 602 | 28.12 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 617 | 28.13 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 17 | 8 |
| 618 | 28.13 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 630 | 28.13 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 650 | 28.14 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 651 | 28.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 702 | 28.16 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 737 | 28.18 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 744 | 28.18 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 750 | 28.19 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 760 | 28.19 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 782 | 28.20 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 825 | 28.22 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 833 | 28.22 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 915 | 28.25 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 997 | 28.29 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |