BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0647500 Os07g0647500|AK058954
         (67 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21105.1  | chr4:11266273-11266724 FORWARD LENGTH=69           100   2e-22

>AT4G21105.1 | chr4:11266273-11266724 FORWARD LENGTH=69
          Length = 68

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 57/67 (85%)

Query: 1  MTEAPFVPREKLFKQQQYFQNLTKHTYLKGRYDVITSVAIPLALAGTSLFMIGRGVYNMS 60
          +TE PF PREKL ++Q+ FQ++ +HTYLKG  D ITSVAIP+ALA +SL+MIG G+YNMS
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMS 61

Query: 61 HGIGKKE 67
          +GIGKKE
Sbjct: 62 NGIGKKE 68



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,337,083
Number of extensions: 38423
Number of successful extensions: 71
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 67
Length of database: 11,106,569
Length adjustment: 39
Effective length of query: 28
Effective length of database: 10,037,345
Effective search space: 281045660
Effective search space used: 281045660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)