Os07g0645100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.
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Os07g0645100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.66 | 0.321 | 12.7 | 1.25 | 0.307 | -0.0755 | 0.495 | -1.57 | 0.475 | 18.8 | 24.3 | 1452 | -- | -- |
| 50.28 | 0.33 | 12.7 | 0.641 | 0.322 | -0.176 | 0.615 | -- | 0.317 | 18.5 | 24.09 | 6981 | -- | -- |
| 46.84 | 0.319 | 12.7 | 1.22 | 0.31 | -0.112 | -- | -1.58 | 0.465 | 18.3 | 24.2 | 2299 | -- | -- |
| 50.3 | 0.33 | 12.7 | 0.727 | 0.345 | -0.263 | -- | -- | 0.349 | 17.6 | 30.39 | 4290 | -- | -- |
| 51.3 | 0.334 | 12.7 | 1.21 | -- | -0.146 | -- | -1.73 | 0.452 | -- | 24.4 | 2187 | -- | -- |
| 51.45 | 0.336 | 12.7 | 0.768 | 0.296 | -- | 0.454 | -- | 0.37 | 18.9 | -- | -- | -- | -- |
| 51.97 | 0.338 | 12.7 | 0.76 | 0.298 | -- | -- | -- | 0.371 | 18.8 | -- | -- | -- | -- |
| 53.68 | 0.341 | 12.7 | 0.686 | -- | -0.258 | -- | -- | 0.419 | -- | 30.6 | 4972 | -- | -- |
| 53.25 | 0.34 | 12.8 | -- | 0.294 | -0.54 | -- | -- | 0.0749 | 18.6 | 26.3 | 47520 | -- | -- |
| 56.61 | 0.352 | 12.7 | 0.753 | -- | -- | -- | -- | 0.365 | -- | -- | -- | -- | -- |
| 67.18 | 0.383 | 12.7 | -- | 0.289 | -- | -- | -- | 0.287 | 18.9 | -- | -- | -- | -- |
| 57.86 | 0.354 | 12.8 | -- | -- | -0.538 | -- | -- | 0.0693 | -- | 26.26 | 47520 | -- | -- |
| 71.58 | 0.395 | 12.7 | -- | -- | -- | -- | -- | 0.282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.65 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 9 | 45.79 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 17 |
| 10 | 45.82 | temperature | 25 | 1440 | > th | dose independent | sin | 13 | NA |
| 18 | 45.85 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 43 | 46.02 | temperature | 25 | 1440 | < th | dose independent | sin | 13 | NA |
| 47 | 46.03 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 93 | 46.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 111 | 46.25 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 133 | 46.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 141 | 46.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 143 | 46.32 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 145 | 46.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 156 | 46.34 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 175 | 46.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 206 | 46.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 211 | 46.41 | wind | 9 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 236 | 46.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 249 | 46.46 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 255 | 46.46 | temperature | 25 | 1440 | > th | dose dependent | sin | 13 | NA |
| 264 | 46.47 | wind | 9 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 295 | 46.50 | wind | 7 | 4320 | > th | dose dependent | rect. | 20 | 9 |
| 308 | 46.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 341 | 46.54 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 365 | 46.56 | wind | 9 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 371 | 46.56 | wind | 7 | 4320 | > th | dose dependent | rect. | 20 | 14 |
| 381 | 46.57 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 504 | 46.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 586 | 46.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 18 |
| 610 | 46.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 652 | 46.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 664 | 46.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 18 |
| 709 | 46.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 711 | 46.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 762 | 46.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 776 | 46.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 14 |
| 803 | 46.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 899 | 46.78 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 935 | 46.79 | atmosphere | 1005 | 43200 | < th | dose dependent | sin | 0 | NA |