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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0645000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Allergen V5/Tpx-1 related family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.05 (0.0887) R2 : 0.559
β1 : -6.44 (0.332) R2dD : 0.395 R2D : 0.217
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.69 (0.261) R2dE : 0.33 R2E : 0.174
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.394 (0.19) R2dN8 : 0.00562 R2N8 : -0.00468
σ : 1.66
deviance : 1268.31
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.8
memory length : 1089
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.42
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1247.93 1.66 6.26 -8.17 0.0375 5.44 -2.23 -8.02 -0.752 18 26.85 1140 11 --
1257.6 1.65 6.05 -6.47 0.0985 4.67 -1.93 -- -0.399 18.8 26.81 1113 9.74 --
1257.56 1.65 6.25 -8.08 0.199 5.54 -- -7.93 -0.709 16.2 26.71 1123 9.77 --
1265.7 1.66 6.05 -6.46 0.25 4.81 -- -- -0.404 15.3 26.63 1082 9.3 --
1258.89 1.65 6.24 -8.02 -- 5.47 -- -7.76 -0.685 -- 26.83 1123 10 --
2100.49 2.15 6.08 -5.17 0.922 -- 2.03 -- -0.571 2.58 -- -- -- --
2112.61 2.15 6.09 -5.22 0.933 -- -- -- -0.58 1.7 -- -- -- --
1268.31 1.66 6.05 -6.44 -- 4.69 -- -- -0.394 -- 26.8 1089 9.42 --
2288.22 2.23 5.85 -- 0.0646 3.94 -- -- 0.472 14.9 27.31 972 6.72 --
2165.57 2.17 6.08 -5.18 -- -- -- -- -0.559 -- -- -- -- --
2829.54 2.49 5.96 -- 0.839 -- -- -- 0.000738 1.51 -- -- -- --
2288.43 2.23 5.85 -- -- 3.92 -- -- 0.48 -- 27.35 972 6.7 --
2872.73 2.5 5.95 -- -- -- -- -- 0.0151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1339.03 temperature 25 720 > th dose dependent rect. 17 16
3 1356.41 radiation 20 1440 > th dose independent rect. 16 15
4 1358.76 temperature 30 1440 > th dose independent sin 12 NA
6 1360.03 temperature 30 1440 < th dose independent rect. 15 21
7 1361.08 temperature 30 1440 > th dose dependent sin 17 NA
10 1361.35 temperature 30 1440 < th dose independent sin 12 NA
12 1361.75 temperature 30 1440 > th dose dependent rect. 14 22
15 1361.98 radiation 20 1440 > th dose independent rect. 16 1
31 1362.34 temperature 30 1440 > th dose independent rect. 15 21
33 1362.59 temperature 30 1440 > th dose dependent rect. 11 8
49 1362.87 temperature 30 1440 > th dose dependent rect. 13 6
120 1364.14 temperature 30 1440 > th dose dependent no NA NA
217 1365.10 temperature 30 1440 > th dose dependent rect. 17 23
218 1365.16 temperature 30 1440 > th dose independent rect. 15 4
244 1365.96 radiation 20 1440 < th dose independent rect. 16 1
245 1366.03 temperature 30 1440 < th dose independent rect. 9 10
247 1366.05 temperature 30 1440 < th dose independent rect. 9 18
248 1366.07 temperature 30 1440 < th dose independent rect. 9 16
266 1366.15 temperature 30 1440 < th dose independent rect. 9 22
268 1366.20 temperature 30 1440 < th dose independent rect. 9 13
290 1366.83 temperature 30 1440 < th dose independent rect. 17 23
294 1367.18 temperature 30 1440 > th dose independent rect. 9 10
315 1367.97 temperature 30 1440 < th dose independent rect. 17 19
327 1369.03 temperature 30 1440 > th dose independent rect. 17 23
335 1369.52 temperature 30 1440 < th dose independent rect. 6 13
336 1369.54 temperature 30 1440 < th dose independent rect. 6 21
337 1369.56 temperature 30 1440 < th dose independent rect. 6 19
342 1369.67 temperature 30 1440 < th dose independent rect. 23 20
344 1369.69 temperature 30 1440 < th dose independent rect. 6 16
348 1369.71 temperature 30 1440 < th dose independent rect. 21 22
356 1369.77 radiation 20 1440 < th dose independent rect. 16 11
364 1369.80 temperature 30 1440 < th dose independent rect. 2 17
372 1369.84 temperature 30 1440 < th dose independent rect. 2 23
374 1369.84 temperature 30 1440 < th dose independent rect. 23 23
390 1369.90 temperature 30 1440 < th dose independent no NA NA
409 1369.97 temperature 30 1440 < th dose independent rect. 2 20
435 1370.33 temperature 30 1440 < th dose independent rect. 15 12
438 1370.49 temperature 30 1440 < th dose independent rect. 15 10
443 1370.66 temperature 30 1440 < th dose independent rect. 15 16
446 1370.82 temperature 30 1440 > th dose independent rect. 17 19
448 1370.85 temperature 30 1440 < th dose independent rect. 15 4
470 1371.12 temperature 30 1440 < th dose independent rect. 15 7
472 1371.14 temperature 25 720 > th dose dependent rect. 17 6
483 1371.49 temperature 30 1440 < th dose independent rect. 11 23
501 1372.08 temperature 30 1440 > th dose independent no NA NA
620 1372.78 temperature 30 1440 > th dose dependent rect. 14 1
904 1386.33 temperature 30 1440 < th dose independent rect. 9 7
937 1389.52 temperature 30 1440 > th dose independent rect. 9 7
938 1389.61 temperature 30 1440 < th dose independent rect. 9 4