BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0645000 Os07g0645000|J075038H20
(194 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06035.1 | chr3:1823172-1824110 REVERSE LENGTH=201 162 9e-41
AT5G19250.1 | chr5:6471983-6472808 FORWARD LENGTH=197 158 2e-39
AT1G54860.1 | chr1:20457522-20458434 REVERSE LENGTH=201 122 9e-29
AT5G19240.1 | chr5:6470209-6470981 FORWARD LENGTH=200 100 5e-22
AT5G19230.1 | chr5:6467636-6468337 FORWARD LENGTH=190 93 7e-20
>AT3G06035.1 | chr3:1823172-1824110 REVERSE LENGTH=201
Length = 200
Score = 162 bits (411), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 96/138 (69%)
Query: 30 LLKGINSYRASLKVPALSENKNAACLAEQLAQQFKDQPCTNTTGANTVPGTEQQFPDYPK 89
LL GINSYR + + LS+N+NA CLA+++A QFK++PCTN TG+ TVPGTE QF +YP+
Sbjct: 32 LLTGINSYRTTQNLTILSKNENAECLADEIADQFKNKPCTNDTGSATVPGTEPQFANYPQ 91
Query: 90 YLDHCHLNASVTGDGQVMPACVPGLVPDVVLTNYTKSQYNQYLNDTKFSGVGIANEGDWX 149
L CHLN S T DG +MPACVP L ++VLTN+TKSQY+ LND+KF+G+GI E DW
Sbjct: 92 ILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSKFTGIGIGKEDDWI 151
Query: 150 XXXXXXXXXXXDYSPAPP 167
YS A P
Sbjct: 152 VVVLTTNTPEGSYSTATP 169
>AT5G19250.1 | chr5:6471983-6472808 FORWARD LENGTH=197
Length = 196
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 99/145 (68%), Gaps = 2/145 (1%)
Query: 23 SDGSDSQ--LLKGINSYRASLKVPALSENKNAACLAEQLAQQFKDQPCTNTTGANTVPGT 80
SD +D + LL GINSYRASL + L N NA CLA+++A QFK+QPCTNTTG+ +VPGT
Sbjct: 24 SDTADEEDVLLTGINSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTNTTGSASVPGT 83
Query: 81 EQQFPDYPKYLDHCHLNASVTGDGQVMPACVPGLVPDVVLTNYTKSQYNQYLNDTKFSGV 140
FP+ P L C LN +VT DG ++PACVP L P +VLTN+T SQY++ LND+KF+G+
Sbjct: 84 TPGFPNLPNLLSKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKFTGI 143
Query: 141 GIANEGDWXXXXXXXXXXXXDYSPA 165
GI ++ +W YSPA
Sbjct: 144 GIGSDDNWIVVVLTTSTPEGSYSPA 168
>AT1G54860.1 | chr1:20457522-20458434 REVERSE LENGTH=201
Length = 200
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 95/143 (66%), Gaps = 2/143 (1%)
Query: 8 VCFLVLASSLLHCARSDGSDSQLLKGINSYRASLKVPALSENKNAACLAEQLAQQFKDQP 67
+ L++ S + C S+ ++ LL+G+NSYR + +VP ++N+ A C+A+++A + +DQP
Sbjct: 13 IIHLLIFSLISTCVVSNQAEDNLLQGLNSYRTAQRVPPFAKNEKADCVADEIADKLEDQP 72
Query: 68 CTNTTGANTV-PGTEQ-QFPDYPKYLDHCHLNASVTGDGQVMPACVPGLVPDVVLTNYTK 125
CTN T A+TV PG+ + +Y L C ++ + T DG ++P C+P +P + LTNYT+
Sbjct: 73 CTNHTTASTVTPGSVPPRLTNYQDILSECKIDPNTTRDGLILPVCIPNRIPTLALTNYTQ 132
Query: 126 SQYNQYLNDTKFSGVGIANEGDW 148
+ Y +YLND+++ G G+ +E +W
Sbjct: 133 TGYARYLNDSRYVGAGVGSEKEW 155
>AT5G19240.1 | chr5:6470209-6470981 FORWARD LENGTH=200
Length = 199
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Query: 21 ARSDGSDSQLLKGINSYRASLKVPALSENKNAACLAEQLAQQFKDQPCTNTTGANTVPGT 80
+ +DG ++ L N YR S+ + L +NKNA CLA+++ Q ++QPCTNTTG+ +VPGT
Sbjct: 25 SNTDG-ENLLFTVFNQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTNTTGSASVPGT 83
Query: 81 EQQFPDYPKYLDHCHLNASVTGDGQVMPACVPGLVPDVVLTNYTKSQYNQYLNDTKFS-- 138
+ P++P L C LN +VT DG ++ C P L+++ + + LND+KF+
Sbjct: 84 DPGIPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDLSSF-ANVLTKNLNDSKFTGA 142
Query: 139 GVGIANEGDW 148
GVGI ++G W
Sbjct: 143 GVGIDSDGIW 152
>AT5G19230.1 | chr5:6467636-6468337 FORWARD LENGTH=190
Length = 189
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 11/148 (7%)
Query: 3 SRISLVCFLVLASSL--LHCARSDGSDSQLLKGINSYRASLKVPALSENKNAACLAEQLA 60
S++ L+C L + SL L + +DG D LL N YR L + L++N+NA CLA+++
Sbjct: 4 SKLHLLCLLSVFLSLHRLVLSGTDGEDDLLLTVFNKYRTGLNLKTLTKNENAECLADEVV 63
Query: 61 QQFKDQPCTNTTGANTVPGTEQQFPDYPKYLDHCHLNASVTGDGQVMPACVPGLVPDVVL 120
Q K+QPCTNT + VPG L C LN +V DG +M C P + L
Sbjct: 64 DQLKNQPCTNTNNSAPVPGNN--------LLAKCSLNTTVVRDGVIMQVCFPKHDKNPDL 115
Query: 121 TNYTKSQYNQYLNDTKFSGVGIANEGDW 148
+N+ S + LND+K +G+GI + W
Sbjct: 116 SNF-NSVVLKNLNDSKITGIGIGSGDIW 142
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,847,172
Number of extensions: 147089
Number of successful extensions: 302
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 5
Length of query: 194
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 101
Effective length of database: 8,556,881
Effective search space: 864244981
Effective search space used: 864244981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)