Os07g0642100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os07g0642100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.86 | 0.453 | 9.51 | -1.65 | 1.38 | -0.618 | 0.774 | 1.31 | -0.514 | 7.54 | 19.96 | 1407 | -- | -- |
| 96.26 | 0.457 | 9.49 | -1.51 | 1.41 | -0.575 | 0.854 | -- | -0.463 | 7.55 | 20.13 | 1401 | -- | -- |
| 93.89 | 0.451 | 9.5 | -1.63 | 1.47 | -0.644 | -- | 1.66 | -0.507 | 7.7 | 29.82 | 1274 | -- | -- |
| 98.17 | 0.461 | 9.49 | -1.49 | 1.39 | -0.555 | -- | -- | -0.457 | 7.49 | 20 | 1412 | -- | -- |
| 180.81 | 0.63 | 9.49 | -1.36 | -- | -0.537 | -- | -0.244 | -0.295 | -- | 9.711 | 1498 | -- | -- |
| 107.46 | 0.486 | 9.46 | -1.42 | 1.37 | -- | 0.792 | -- | -0.313 | 7.4 | -- | -- | -- | -- |
| 109.16 | 0.489 | 9.46 | -1.4 | 1.37 | -- | -- | -- | -0.315 | 7.37 | -- | -- | -- | -- |
| 181.16 | 0.63 | 9.49 | -1.35 | -- | -0.537 | -- | -- | -0.294 | -- | 9.69 | 1505 | -- | -- |
| 150.69 | 0.575 | 9.44 | -- | 1.26 | -0.771 | -- | -- | -0.171 | 4.87 | 10 | 1440 | -- | -- |
| 209.12 | 0.676 | 9.49 | -1.38 | -- | -- | -- | -- | -0.292 | -- | -- | -- | -- | -- |
| 160.71 | 0.593 | 9.42 | -- | 1.36 | -- | -- | -- | -0.159 | 7.43 | -- | -- | -- | -- |
| 229.19 | 0.707 | 9.46 | -- | -- | -0.555 | -- | -- | -0.144 | -- | 9.69 | 1505 | -- | -- |
| 259.05 | 0.751 | 9.46 | -- | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.08 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 91.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 3 | 92.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 4 | 92.01 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 5 | 92.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 9 | 92.56 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 10 | 92.59 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 11 | 92.64 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 14 | 92.71 | radiation | 10 | 1440 | < th | dose dependent | sin | 0 | NA |
| 17 | 92.74 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 11 |
| 20 | 92.81 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 26 | 92.89 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 29 | 92.95 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 33 | 92.96 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 9 |
| 37 | 93.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 44 | 93.03 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 49 | 93.05 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 65 | 93.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 73 | 93.10 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 99 | 93.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 100 | 93.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 110 | 93.14 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 113 | 93.14 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 22 |
| 144 | 93.15 | radiation | 20 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 162 | 93.17 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 164 | 93.17 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 205 | 93.19 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 248 | 93.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 256 | 93.26 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 284 | 93.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 367 | 93.36 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 368 | 93.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 372 | 93.37 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 380 | 93.43 | radiation | 20 | 1440 | < th | dose independent | sin | 4 | NA |
| 408 | 93.51 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 429 | 93.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 432 | 93.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 15 |
| 459 | 93.52 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 462 | 93.53 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 468 | 93.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 471 | 93.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 599 | 93.66 | radiation | 1 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 659 | 93.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 12 |
| 666 | 93.72 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 677 | 93.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 768 | 93.81 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 856 | 93.85 | radiation | 1 | 1440 | > th | dose dependent | sin | 5 | NA |
| 884 | 93.88 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 23 |