BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0642100 Os07g0642100|AK100505
(145 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19130.1 | chr4:10466618-10469092 REVERSE LENGTH=785 49 9e-07
AT5G08020.1 | chr5:2572107-2574879 FORWARD LENGTH=605 49 1e-06
AT5G61000.1 | chr5:24549682-24552641 REVERSE LENGTH=630 47 3e-06
>AT4G19130.1 | chr4:10466618-10469092 REVERSE LENGTH=785
Length = 784
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 2 YRPVTNPLMISFTKWTTLEECIDASDDFPAITFSLTPFQDVPSLVDKNAFYVDIMGVITE 61
+ + N I +T+++C + P F D+ S+ +N VD++G+++
Sbjct: 314 FNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIESM--ENNCIVDVIGIVSS 371
Query: 62 IGATDTLRPKSRNTETLKRTMQIWDASNSTLPITLWGN 99
I T T+ K+ T T KR++Q+ D S ++ +T+WG+
Sbjct: 372 ISPTVTITRKN-GTATPKRSLQLKDMSGRSVEVTMWGD 408
>AT5G08020.1 | chr5:2572107-2574879 FORWARD LENGTH=605
Length = 604
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 2 YRPVTNPLMISFTKWTTLEECIDASDDFPAITFSLTPFQDVPSLVDKNAFYVDIMGVITE 61
++ V N ++ + + +EE + P F+ P ++ + V++ +D++GV+
Sbjct: 243 FKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPIDELGTYVNQKDL-IDVIGVVQS 301
Query: 62 IGATDTLRPKSRNTETLKRTMQIWDASNSTLPITLWGNTAAAFNAEELYNAGQKKPQVIV 121
+ T ++R K+ N KR + + D + T+ ++LW + A +EL + P VI
Sbjct: 302 VSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGI-GQELLDMADNHP-VIA 359
Query: 122 FVGTVVKNYKGIGLT 136
V ++G+ L+
Sbjct: 360 IKSLKVGAFQGVSLS 374
>AT5G61000.1 | chr5:24549682-24552641 REVERSE LENGTH=630
Length = 629
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 29 FPAITFSLTPFQDVPSLVDKNAFYVDIMGVITEIGATDTLRPKSRNTETLKRTMQIWDAS 88
P F+ P +++ V++ +D++GV+ + T ++R ++ N KR + + D S
Sbjct: 294 IPETKFNFVPIEELGLYVNQKEL-IDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADES 352
Query: 89 NSTLPITLWGNTAAAFNAEELYNAGQKKPQVIVFVGTVVKNYKGIGLT 136
T+ ++LW + A +EL + + P VI V +++G+ L+
Sbjct: 353 RKTVVVSLWNDLATGI-GQELLDMADQSP-VIAIKSLKVGDFQGVSLS 398
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,205,715
Number of extensions: 122195
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 3
Length of query: 145
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 56
Effective length of database: 8,666,545
Effective search space: 485326520
Effective search space used: 485326520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)