Os07g0640100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Complex 1 LYR protein family protein.
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Os07g0640100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Complex 1 LYR protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.08 | 0.211 | 11.6 | -0.703 | 0.24 | 0.343 | -0.248 | -1.66 | -0.132 | 17.9 | 19.18 | 1376 | -- | -- |
| 22.38 | 0.22 | 11.5 | -0.294 | 0.226 | 0.362 | -0.243 | -- | -0.00707 | 17.9 | 11.29 | 5403 | -- | -- |
| 20.22 | 0.209 | 11.6 | -0.692 | 0.236 | 0.338 | -- | -1.62 | -0.131 | 18 | 19.14 | 1429 | -- | -- |
| 21.87 | 0.218 | 11.5 | -0.378 | 0.238 | 0.426 | -- | -- | -0.0756 | 17.9 | 7.671 | 10099 | -- | -- |
| 20.96 | 0.213 | 11.6 | -0.713 | -- | 0.545 | -- | -2.48 | -0.138 | -- | 22.57 | 623 | -- | -- |
| 24.82 | 0.234 | 11.5 | -0.13 | 0.229 | -- | -0.188 | -- | 0.0602 | 18.3 | -- | -- | -- | -- |
| 24.91 | 0.234 | 11.5 | -0.128 | 0.228 | -- | -- | -- | 0.0595 | 18.3 | -- | -- | -- | -- |
| 24.12 | 0.229 | 11.5 | -0.215 | -- | 0.362 | -- | -- | -0.00541 | -- | 21.39 | 522 | -- | -- |
| 24.13 | 0.229 | 11.5 | -- | 0.241 | 0.223 | -- | -- | 0.0378 | 17.9 | 11.15 | 2695 | -- | -- |
| 27.61 | 0.246 | 11.5 | -0.134 | -- | -- | -- | -- | 0.0546 | -- | -- | -- | -- | -- |
| 25.33 | 0.235 | 11.5 | -- | 0.23 | -- | -- | -- | 0.0737 | 18.2 | -- | -- | -- | -- |
| 25.25 | 0.234 | 11.5 | -- | -- | 0.312 | -- | -- | 0.032 | -- | 22.79 | 522 | -- | -- |
| 28.08 | 0.247 | 11.5 | -- | -- | -- | -- | -- | 0.0694 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 3 | 19.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 8 | 19.66 | radiation | 20 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 9 | 19.67 | radiation | 20 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 24 | 19.69 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 32 | 19.72 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 35 | 19.72 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 45 | 19.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 69 | 19.81 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 80 | 19.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 81 | 19.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 90 | 19.83 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 92 | 19.83 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 114 | 19.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 118 | 19.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 149 | 19.88 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 152 | 19.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 159 | 19.89 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 199 | 19.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 201 | 19.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 296 | 19.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 320 | 19.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 367 | 19.97 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 371 | 19.97 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 398 | 19.98 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 513 | 20.01 | wind | 5 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 557 | 20.03 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 585 | 20.03 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 609 | 20.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 613 | 20.04 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 666 | 20.06 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 667 | 20.06 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 711 | 20.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 719 | 20.07 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 750 | 20.08 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 752 | 20.08 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 753 | 20.08 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 809 | 20.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 844 | 20.10 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 850 | 20.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 861 | 20.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 907 | 20.12 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 913 | 20.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 914 | 20.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 916 | 20.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 933 | 20.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 936 | 20.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 951 | 20.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 977 | 20.14 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 997 | 20.14 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |