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Os07g0639900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thymidylate kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.08 (0.0376) R2 : 0.541
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.16 (0.144) R2dC : 1.1 R2C : -0.49
β3 : 2.53 (0.12) R2dE : 1.02 R2E : -0.566
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.232 (0.0793) R2dN8 : 0.0114 R2N8 : -0.00146
σ : 0.706
deviance : 229.64
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_____
C
peak time of C : 15.7
E
wheather : radiation
threshold : 0.03
memory length : 155
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.35
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.91 0.697 7.1 -0.43 3.19 2.56 1.81 0.499 0.185 15.7 0.03001 152 6.19 --
220.38 0.691 7.09 -0.411 3.17 2.53 1.31 -- 0.188 15.7 0.03 152 6.21 --
224.62 0.698 7.09 -0.345 3 2.41 -- -0.402 0.227 15.8 0.02466 161 6.56 --
225.48 0.699 7.09 -0.404 3.17 2.53 -- -- 0.197 15.7 0.03004 156 6.28 --
289.48 0.792 7.08 -0.543 -- 1.96 -- 0.329 0.131 -- 137.2 11 10.7 --
274.18 0.776 7.15 -0.501 2.01 -- 0.167 -- 0.0763 19.6 -- -- -- --
274.26 0.776 7.15 -0.506 2.01 -- -- -- 0.0765 19.6 -- -- -- --
273.43 0.77 7.02 -0.586 -- 2.37 -- -- 0.237 -- 136.9 403 14.2 --
229.64 0.706 7.08 -- 3.16 2.53 -- -- 0.232 15.7 0.03 155 6.35 --
491.93 1.04 7.1 -0.534 -- -- -- -- 0.0462 -- -- -- -- --
281 0.784 7.13 -- 2.02 -- -- -- 0.133 19.6 -- -- -- --
275.94 0.774 7.07 -- -- 2.32 -- -- 0.193 -- 153.8 479 14.8 --
499.44 1.04 7.09 -- -- -- -- -- 0.105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.20 humidity 90.0 90 < th dose independent rect. 8 7
2 215.09 precipitation 0.1 270 < th dose independent rect. 18 9
3 215.09 precipitation 0.1 270 < th dose dependent rect. 18 9
4 215.14 humidity 60.0 270 > th dose independent rect. 18 9
5 215.43 radiation 1.0 270 < th dose independent rect. 18 9
6 215.55 temperature 30.0 270 < th dose independent rect. 18 9
7 215.95 temperature 15.0 90 > th dose independent rect. 8 7
8 216.22 radiation 1.0 270 < th dose dependent rect. 18 9
13 216.58 radiation 1.0 270 > th dose independent rect. 7 7
16 216.67 wind 9.0 270 < th dose independent rect. 18 9
17 216.74 temperature 10.0 270 > th dose independent rect. 18 9
22 216.74 temperature 10.0 270 > th dose independent rect. 3 15
23 216.74 atmosphere 1015.0 270 < th dose independent rect. 3 15
26 217.30 wind 9.0 90 < th dose independent rect. 8 7
32 217.68 atmosphere 995.0 270 > th dose independent rect. 18 9
36 217.79 wind 9.0 270 < th dose dependent rect. 8 6
39 217.86 precipitation 0.1 90 < th dose independent rect. 8 7
40 217.86 precipitation 0.1 90 < th dose dependent rect. 8 7
44 218.29 atmosphere 1015.0 90 < th dose independent rect. 8 7
45 218.29 temperature 10.0 90 > th dose independent rect. 15 17
47 218.35 temperature 10.0 90 > th dose dependent rect. 8 7
48 218.37 temperature 15.0 270 > th dose independent rect. 7 20
49 218.46 temperature 15.0 270 > th dose independent rect. 8 18
50 218.47 wind 5.0 270 < th dose independent rect. 3 4
52 218.49 radiation 30.0 90 < th dose independent rect. 15 18
53 218.59 atmosphere 995.0 90 > th dose independent rect. 8 7
59 218.85 humidity 90.0 10 < th dose independent rect. 9 7
61 219.00 precipitation 0.1 270 < th dose independent rect. 7 20
62 219.00 precipitation 0.1 270 < th dose dependent rect. 7 20
66 219.20 radiation 30.0 270 < th dose dependent rect. 3 5
68 219.29 wind 9.0 90 < th dose independent rect. 15 17
72 219.45 wind 9.0 270 < th dose independent rect. 7 20
73 219.48 wind 9.0 10 < th dose independent rect. 9 7
83 219.77 precipitation 0.1 270 < th dose independent rect. 8 18
84 219.77 precipitation 0.1 270 < th dose dependent rect. 8 18
95 219.96 precipitation 0.1 270 < th dose independent rect. 3 15
96 219.96 precipitation 0.1 270 < th dose dependent rect. 3 15
98 219.98 wind 9.0 270 < th dose independent rect. 8 18
101 220.01 wind 9.0 270 < th dose independent rect. 3 15
102 220.09 radiation 20.0 270 < th dose independent rect. 2 6
125 220.58 wind 7.0 270 < th dose independent rect. 2 6
127 220.65 atmosphere 995.0 10 > th dose independent rect. 9 7
131 220.78 temperature 10.0 10 > th dose independent rect. 9 7
133 220.78 atmosphere 1015.0 10 < th dose independent rect. 9 7
134 220.78 precipitation 0.1 10 < th dose independent rect. 9 7
135 220.78 temperature 10.0 10 > th dose independent rect. 16 17
136 220.78 precipitation 0.1 10 < th dose dependent rect. 9 7
138 220.82 atmosphere 995.0 90 > th dose independent rect. 15 17
140 220.92 radiation 1.0 10 > th dose independent rect. 9 7
142 220.95 temperature 10.0 270 > th dose independent rect. 3 4
144 220.95 temperature 30.0 270 < th dose independent rect. 3 4
145 220.95 humidity 50.0 270 > th dose independent rect. 3 4
147 220.95 atmosphere 995.0 270 > th dose independent rect. 3 4
148 220.95 atmosphere 1015.0 270 < th dose independent rect. 3 4
149 220.95 radiation 40.0 270 < th dose independent rect. 3 4
183 221.39 radiation 40.0 270 < th dose independent rect. 2 6
185 221.44 temperature 10.0 270 > th dose independent rect. 2 6
187 221.44 temperature 30.0 270 < th dose independent rect. 2 6
188 221.44 humidity 50.0 270 > th dose independent rect. 2 6
190 221.44 atmosphere 995.0 270 > th dose independent rect. 2 6
191 221.44 atmosphere 1015.0 270 < th dose independent rect. 2 6
195 221.51 atmosphere 995.0 270 > th dose independent rect. 3 15
201 221.56 wind 9.0 10 < th dose independent rect. 16 17
204 221.60 radiation 40.0 270 < th dose dependent rect. 2 7
205 221.61 precipitation 0.1 270 < th dose independent rect. 3 4
206 221.61 precipitation 0.1 270 < th dose dependent rect. 3 4
210 221.77 wind 9.0 270 < th dose dependent rect. 3 4
219 222.09 precipitation 0.1 270 < th dose independent rect. 2 6
220 222.09 precipitation 0.1 270 < th dose dependent rect. 2 6
232 222.20 atmosphere 995.0 10 > th dose independent rect. 16 17
243 222.43 temperature 10.0 10 > th dose dependent rect. 9 7
260 222.58 wind 1.0 90 > th dose independent rect. 8 7
271 222.76 radiation 40.0 10 < th dose independent rect. 16 17
303 223.46 precipitation 0.1 270 < th dose independent rect. 6 22
304 223.46 precipitation 0.1 270 < th dose dependent rect. 6 22
311 223.55 atmosphere 1015.0 90 < th dose independent rect. 15 17
315 223.60 wind 1.0 10 > th dose independent rect. 9 7
318 223.64 temperature 10.0 270 > th dose dependent rect. 3 4
323 223.69 wind 9.0 270 < th dose independent rect. 6 22
328 223.73 humidity 50.0 270 > th dose independent rect. 8 6
346 223.89 wind 9.0 270 < th dose dependent rect. 7 20
347 223.90 wind 9.0 270 < th dose dependent rect. 8 18
365 224.06 humidity 50.0 270 > th dose dependent rect. 3 4
375 224.31 humidity 50.0 270 > th dose independent rect. 8 19
385 224.47 precipitation 0.1 90 < th dose independent rect. 15 17
387 224.47 precipitation 0.1 90 < th dose dependent rect. 15 17
435 225.08 humidity 50.0 270 > th dose dependent rect. 2 6
439 225.13 atmosphere 1015.0 270 < th dose dependent rect. 3 4
441 225.18 atmosphere 1015.0 10 < th dose independent rect. 16 17
501 225.61 atmosphere 1010.0 270 < th dose independent rect. 4 2
509 225.69 wind 9.0 270 < th dose dependent rect. 4 2
511 225.75 humidity 90.0 90 < th dose dependent rect. 8 7
538 225.85 temperature 10.0 1440 > th dose independent rect. 10 6
541 225.85 temperature 10.0 1440 > th dose independent rect. 16 18
546 225.87 precipitation 0.1 270 < th dose independent rect. 4 2
547 225.87 precipitation 0.1 270 < th dose dependent rect. 4 2
576 226.03 wind 9.0 270 < th dose dependent rect. 2 6
580 226.07 radiation 40.0 270 < th dose dependent rect. 4 2
627 226.40 temperature 10.0 270 > th dose dependent rect. 2 6
649 226.54 humidity 90.0 10 < th dose dependent rect. 9 6
681 226.71 radiation 1.0 90 < th dose dependent sin 12 NA
694 226.85 wind 1.0 270 > th dose independent rect. 14 17
709 226.95 radiation 1.0 270 < th dose independent rect. 3 8
729 227.12 wind 1.0 270 > th dose independent rect. 3 15
736 227.17 precipitation 0.1 10 < th dose independent rect. 16 17
738 227.17 precipitation 0.1 10 < th dose dependent rect. 16 17
750 227.24 humidity 50.0 10 > th dose independent rect. 16 17
795 227.38 temperature 10.0 1440 > th dose independent rect. 5 5
798 227.38 atmosphere 995.0 1440 > th dose independent rect. 5 5
799 227.38 atmosphere 1015.0 1440 < th dose independent rect. 5 5
800 227.38 temperature 10.0 1440 > th dose independent rect. 10 19
856 227.77 temperature 10.0 90 > th dose dependent rect. 15 17
865 227.82 wind 1.0 270 > th dose independent rect. 2 6
870 227.85 temperature 10.0 10 > th dose dependent rect. 16 17
934 228.16 wind 1.0 270 > th dose independent rect. 3 4
935 228.16 temperature 10.0 270 > th dose dependent rect. 4 2
936 228.16 radiation 40.0 90 < th dose dependent rect. 15 18
948 228.30 humidity 70.0 90 > th dose independent rect. 3 8